TkA08G133130 | RubberDandelionOmics

Gene overview

TkA08G133130

Reference: TK1151 Chr: Chr08 Coordinates: 34593447-34594350 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · TkA08G133130|TK1151|cDNA

ATGTCACTGACGGCAGCAACAGGTGATCCCACCAGGGTGCACTTTTTCTTCCTTCTTGATTCTTCTTGTTCACACCCCTTCCCCAACCCCAAAACACAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACGGCGGCAATGCGAAACCTCCATTAAATAGAGAAACCACTCAATTGCTTCAAGCTTACTTGTTACTACTCATGGACTCATCTGACTGGATTCAGCCACTGTCATCTTCGCCGGACGTCACTGCACC...

CDS

Download CDS FASTA

828 bp · TkA08G133130|TK1151|CDS

ATGTCACTGACGGCAGCAACAGGTGATCCCACCAGGGTGCACTTTTTCTTCCTTCTTGATTCTTCTTGTTCACACCCCTTCCCCAACCCCAAAACACAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACGGCGGCAATGCGAAACCTCCATTAAATAGAGAAACCACTCAATTGCTTCAAGCTTACTTGTTACTACTCATGGACTCATCTGACTGGATTCAGCCACTGTCATCTTCGCCGGACGTCACTGCACC...

Protein

Download Protein FASTA

275 aa · TkA08G133130|TK1151|PROTEIN

MSLTAATGDPTRVHFFFLLDSSCSHPFPNPKTQFSLSLSLSLSLNGGNAKPPLNRETTQLLQAYLLLLMDSSDWIQPLSSSPDVTAPMAASMENKRRPNQDQALVHCPRCDSPHTKFCYYNNYSLSQPRYFCRSCRRYWTKGGTLRNIPVGGVGRKNGNVNGDGIRPTLNSLQFSYPESPVSVYPNFMESGGDGGPFAAMVACGGYGADTGNTHGLNLFGEMEHYENMMNEVDVKPRVFSFEWEDQTGCHSDIYGSGGAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G133130`
TK1151 ID	TkA08G133130
OH-1004 ID	LXL04_031860
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.000
Protein coverage (%)	TK1151 83.636 / OH-1004 89.316 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G133130

Location Chr08:34593447-34594350 (+)

Description Similar to DOF5.7: Dof zinc finger protein DOF5.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24060`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g64620`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At3g21270`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g51700`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031860 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010052 guard cell differentiation Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010118 stomatal movement Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:1902066 regulation of cell wall pectin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G51700

ath:AT4G24060

ath:AT5G60200

ath:AT5G65590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · TkA08G133130 · TK1151

Cytoplasm0.101

Rank 2 · TkA08G133130 · TK1151

Cell membrane0.035

Rank 3 · TkA08G133130 · TK1151

Endoplasmic reticulum0.034

Rank 4 · TkA08G133130 · TK1151

Plastid0.015

Rank 5 · TkA08G133130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23451Zn_ribbon_PaaD22-27 aa

PF23451Zn_ribbon_PaaD94-136 aa

PF26757DUF825094-136 aa

PF00628PHD98-135 aa

PF12773DZR100-135 aa

PF02701Zn_ribbon_Dof104-157 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G133130	`PF23451`	Zn_ribbon_PaaD	22	27	0.0021	18.4
TkA08G133130	`PF23451`	Zn_ribbon_PaaD	94	136	0.0021	18.4
TkA08G133130	`PF26757`	DUF8250	94	136	0.42	11.5
TkA08G133130	`PF00628`	PHD	98	135	0.11	13.3
TkA08G133130	`PF12773`	DZR	100	135	1.1	10.2
TkA08G133130	`PF02701`	Zn_ribbon_Dof	104	157	3.9e-32	110.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LAP8`	Arabidopsis thaliana	sp\|Q8LAP8\|DOF46_ARATH Dof zinc finger protein DOF4.6	70.000%	Swiss-Prot	Low
`Q84JQ8`	Arabidopsis thaliana	sp\|Q84JQ8\|DOF18_ARATH Dof zinc finger protein DOF1.8	72.500%	Swiss-Prot	Low
`Q84TE9`	Arabidopsis thaliana	sp\|Q84TE9\|DOF53_ARATH Dof zinc finger protein DOF5.3	77.000%	Swiss-Prot	Low
`Q94AR6`	Arabidopsis thaliana	sp\|Q94AR6\|DOF31_ARATH Dof zinc finger protein DOF3.1	77.200%	Swiss-Prot	Low
`O82155`	Arabidopsis thaliana	sp\|O82155\|DOF17_ARATH Dof zinc finger protein DOF1.7	56.000%	Swiss-Prot	Low

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