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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G124340
Reference: TK1151 Chr: Chr08 Coordinates: 32296732-32300612 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2544 bp · TkA08G124340|TK1151|cDNA

CCCAGCACTCTGGAACTAGGGTTTTCTCTTACGTATATAAAGTTCTAGAAAACTCACCGTCCGGTGCAGTGCAGATTGTCTGCCCTCCAAAAAAAAAGAAACAATCGCTCGCTCTCTACGCTTTTTGATCTCTAGATTTATATATTGAACGTCGTCGACGAGTATCTCCGTTACGGCTCTCCGGCGGTTTTATCCCTTATTGGTAATTATTCGGAAAAATCCTTAAAAATTTTGAATTAAGAGGGTGGTTGAGTTGTTAG...

CDS

Download CDS FASTA

1671 bp · TkA08G124340|TK1151|CDS

ATGTACTCTCATAGGGACCCAAGCATCCGTAAAAGCGGAACTGCAAACATCTTCATTAAGAACTTGGACAAGTCAATTGACAACAAAGCCCTTCACGACACCTTCTCAACCTTCGGCAACATCCTCTCCTGCAAAATCGCGGTCGACAACACCGGCCAATCAAAAGGCTACGGATTCGTCCAATTCGACACCGAAGAAGCCGCCCAAACCGCAATCGACAAACTAAACGGAATGCTGATAAACGACAAACAAGTCTATGT...

Protein

Download Protein FASTA

556 aa · TkA08G124340|TK1151|PROTEIN

MYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSTFGNILSCKIAVDNTGQSKGYGFVQFDTEEAAQTAIDKLNGMLINDKQVYVGHFLRKQERDSSLSRTKFNNVYVKNLSETTTDEDLKQTFGEYGIITSAVVMRDGDGKSKCFGFVNFENADDAANAVEVLNGKKFDEKEWYVGKAQKKSEREMELKSRFEQTAKEAVDKFQGVNLYVKNLDDTIDDDKLKELFAEYGTITSCKVMRDPSGISRGSGFVAFSSSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G124340
TK1151 IDTkA08G124340
OH-1004 IDLXL04_031700
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 81.471
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G124340
LocationChr08:32296732-32300612 (-)
DescriptionSimilar to PAB2: Polyadenylate-binding protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g49760 Binds the poly(A) tail of mRNA. No verified direct reference in this release
At4g34110 Binds the poly(A) tail of mRNA. No verified direct reference in this release
At2g23350 Binds the poly(A) tail of mRNA. No verified direct reference in this release
At1g71770 Binds the poly(A) tail of mRNA.
Differential organ-specific expression of three poly(A)-binding-protein genes from Arabidopsis thaliana.1993 · DOI: 10.1073/pnas.90.14.6686
A pollen-, ovule-, and early embryo-specific poly(A) binding protein from Arabidopsis complements essential functions in yeast.1996 · DOI: 10.1105/tpc.8.8.1261
At1g22760 Binds the poly(A) tail of mRNA.
Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation.2003 · DOI: 10.1093/genetics/163.1.311
Evidence that poly(A) binding protein has an evolutionarily conserved function in facilitating mRNA biogenesis and export.2003 · DOI: 10.1261/rna.5128903

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031700 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006413 translational initiation Biological Process
GO:0006417 regulation of translation Biological Process
GO:0006446 regulation of translational initiation Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening Biological Process
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G22760
ath:AT1G49760
ath:AT1G71770
ath:AT2G23350
ath:AT4G34110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654
Rank 1 · TkA08G124340 · TK1151
Nucleus0.471
Rank 2 · TkA08G124340 · TK1151
Cell membrane0.062
Rank 3 · TkA08G124340 · TK1151
Mitochondrion0.051
Rank 4 · TkA08G124340 · TK1151
Endoplasmic reticulum0.047
Rank 5 · TkA08G124340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28978RRM_SRRT14-81 aa
PF28976RRM_ACIN115-78 aa
PF16367RRM_716-74 aa
PF00076RRM_117-85 aa
PF13893RRM_517-87 aa
PF11608RRM_MARF118-76 aa
PF22976RRM_1021-84 aa
PF08777RRM_321-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G124340PF28978RRM_SRRT14810.1413.0
TkA08G124340PF28976RRM_ACIN115787.8e-1039.4
TkA08G124340PF16367RRM_716747.7e-0523.3
TkA08G124340PF00076RRM_117854.2e-70232.3
TkA08G124340PF13893RRM_517873.6e-0937.1
TkA08G124340PF11608RRM_MARF118760.005717.5
TkA08G124340PF22976RRM_1021842.8e-1144.1
TkA08G124340PF08777RRM_321803.2e-0627.8
TkA08G124340PF26250RRM_RdRP1_238721.2e-0526.3
TkA08G124340PF29326RRM_MUD2_C46901.7e-0732.0
TkA08G124340PF28441RRM_1148790.0001822.5
TkA08G124340PF14703PHM7_cyt52720.4111.6
TkA08G124340PF08206OB_RNB52660.6110.5
TkA08G124340PF11767SET_assoc56828e-0522.9
TkA08G124340PF07576BRAP258820.2612.2
TkA08G124340PF16842RRM_occluded59892.1e-0834.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FXA2Arabidopsis thalianasp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 868.600%Swiss-ProtHigh
P42731Arabidopsis thalianasp|P42731|PABP2_ARATH Polyadenylate-binding protein 268.500%Swiss-ProtHigh
O22173Arabidopsis thalianasp|O22173|PABP4_ARATH Polyadenylate-binding protein 456.900%Swiss-ProtHigh
Q05196Arabidopsis thalianasp|Q05196|PABP5_ARATH Polyadenylate-binding protein 552.900%Swiss-ProtHigh
O64380Arabidopsis thalianasp|O64380|PABP3_ARATH Polyadenylate-binding protein 352.800%Swiss-ProtHigh

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