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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G121050
Reference: TK1151 Chr: Chr08 Coordinates: 31496889-31501298 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1827 bp · TkA08G121050|TK1151|cDNA

CTCAGATCATGTAAAATCGACGGCCCATATTACAAAACAGCTATTTAATCCAATGGTTGTTAAATCATACGCGTCATGAAGTAGGGCTTCCCCATGAATCCTTCCTTAACACCTCTCTCTTATCTCTTTTTCTCTCGAAACTATCAGATTCGCCGTTTTCATTACAGAAACCTATACGTATAACACATACCCTTTTAAACTTTGCCAATTTTTATCAAAGAGACTCAGCTAGAAGATGCAATCAACTACTAACGGCGGTG...

CDS

Download CDS FASTA

1236 bp · TkA08G121050|TK1151|CDS

ATGCAGTACCCAGCGGCGGCGATGGTAATGCAGCACCAAATGATGGCGCCGTCTCCGGGACATTACCCGATGGCCCCACACTACATGCCGTATCATCCACACCACCTCCATCATCCGGTGGCGCAACAGCCGCAACAGGGATCAGGTACCGGCGGCGGAGAAAACAGAACGATCTGGGTCGGCGACCTTCATAATTGGATGGATGAGGATTACCTTCGGAGCTGTTTTGCTTCCACTGGCGAGGTTGCTTCCATTAAAGT...

Protein

Download Protein FASTA

411 aa · TkA08G121050|TK1151|PROTEIN

MQYPAAAMVMQHQMMAPSPGHYPMAPHYMPYHPHHLHHPVAQQPQQGSGTGGGENRTIWVGDLHNWMDEDYLRSCFASTGEVASIKVIRNKQTGFSEGYGFVEFFSHTAAEKVLQGYTCIAMPNTEQPFRLNWATFSMGDKRSNNGSDLSIFVGDLAADVTDTLLHETFANKYPSVKAAKVVIDANTGRSKGYGFVRFGDDSERTQAMTEMNGTYCSSRPMRIGAATPRKSSGYQQQYGSQGGYMSNGGSQSDGDSNNTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G121050
TK1151 IDTkA08G121050
OH-1004 IDLXL04_031661
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.800
Protein coverage (%)TK1151 100.000 / OH-1004 89.407
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G121050
LocationChr08:31496889-31501298 (-)
DescriptionSimilar to RBP47C: Polyadenylate-binding protein RBP47C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47500 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At1g47490 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At1g49600 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At3g19130 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031661 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0034063 stress granule assembly Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008143 poly(A) binding Molecular Function
KEGG gene cross-reference
ath:AT1G47490
ath:AT1G47500
ath:AT1G49600
ath:AT3G19130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.693
Rank 1 · TkA08G121050 · TK1151
Cytoplasm0.503
Rank 2 · TkA08G121050 · TK1151
Cell membrane0.049
Rank 3 · TkA08G121050 · TK1151
Endoplasmic reticulum0.025
Rank 4 · TkA08G121050 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA08G121050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13893RRM_539-92 aa
PF16367RRM_756-115 aa
PF23085RRM_PARP14_356-115 aa
PF00076RRM_158-116 aa
PF22976RRM_1067-131 aa
PF08777RRM_369-124 aa
PF29326RRM_MUD2_C71-90 aa
PF26250RRM_RdRP1_274-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G121050PF13893RRM_539921.3e-0732.0
TkA08G121050PF16367RRM_7561151.6e-0628.7
TkA08G121050PF23085RRM_PARP14_3561150.0001123.0
TkA08G121050PF00076RRM_1581161.6e-52176.0
TkA08G121050PF22976RRM_10671315.8e-0523.9
TkA08G121050PF08777RRM_3691241.6e-0525.6
TkA08G121050PF29326RRM_MUD2_C71900.002218.8
TkA08G121050PF26250RRM_RdRP1_2741100.1912.9
TkA08G121050PF14703PHM7_cyt841270.1413.0
TkA08G121050PF14605Nup35_RRM_2971120.01615.8
TkA08G121050PF23085RRM_PARP14_31501810.0001123.0
TkA08G121050PF00076RRM_11512211.6e-52176.0
TkA08G121050PF16367RRM_71512021.6e-0628.7
TkA08G121050PF22976RRM_101592145.8e-0523.9
TkA08G121050PF26250RRM_RdRP1_21762070.1912.9
TkA08G121050PF08777RRM_31832101.6e-0525.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SX80Arabidopsis thalianasp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C'64.100%Swiss-ProtHigh
Q9SX79Arabidopsis thalianasp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C67.300%Swiss-ProtHigh
F4I3B3Arabidopsis thalianasp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A65.200%Swiss-ProtHigh
Q0WW84Arabidopsis thalianasp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B64.100%Swiss-ProtHigh

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