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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G118540
Reference: TK1151 Chr: Chr08 Coordinates: 30878425-30879699 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1275 bp · TkA08G118540|TK1151|cDNA

ATGAACAAAGCCGTGCGTAATTCCGATCCTAACCTCTCCGCTAATTTACCGGCAAGCGACGACGACTATAGCAACCGTTCCAGCAACTCCGCCGCCTATGAACCCAACCGTATGAGCTGTGAGGCTTCACCCATTATGATGTCTCCATGGAACCAGACATCTTCTGTCCAGCAATCTCCGTGGTTGAGTAGCGGCGTTGACAGCTCCGGCCATCAAAAGAACGATTTCGTTGGGTCTCTTGTCCGGGAGGAAGGGCACAT...

CDS

Download CDS FASTA

1275 bp · TkA08G118540|TK1151|CDS

ATGAACAAAGCCGTGCGTAATTCCGATCCTAACCTCTCCGCTAATTTACCGGCAAGCGACGACGACTATAGCAACCGTTCCAGCAACTCCGCCGCCTATGAACCCAACCGTATGAGCTGTGAGGCTTCACCCATTATGATGTCTCCATGGAACCAGACATCTTCTGTCCAGCAATCTCCGTGGTTGAGTAGCGGCGTTGACAGCTCCGGCCATCAAAAGAACGATTTCGTTGGGTCTCTTGTCCGGGAGGAAGGGCACAT...

Protein

Download Protein FASTA

424 aa · TkA08G118540|TK1151|PROTEIN

MNKAVRNSDPNLSANLPASDDDYSNRSSNSAAYEPNRMSCEASPIMMSPWNQTSSVQQSPWLSSGVDSSGHQKNDFVGSLVREEGHIYSLAATGNLLYTGSDSKNIRVWRNMKEFTAFKSHSGLVKAIILSGDKIFTGHQDGRVRVWKKNRKDPRNHKRVGTFPTFFDVLKTSVRPKNYVEVKRKCTTLWIKHCDAISCLSIDEDEGLLYSASWDRTFKVWQTSNSKCLESVKAHDDAVNSVIGTKSGLVFTGSADGSVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G118540
TK1151 IDTkA08G118540
OH-1004 IDLXL04_031625
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 96.804
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G118540
LocationChr08:30878425-30879699 (+)
DescriptionSimilar to JGB: Protein JINGUBANG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26490 Negative regulator of pollen germination. No verified direct reference in this release
At5g49200 Zinc finger CCCH domain-containing protein 62. No verified direct reference in this release
At5g40880 Zinc finger CCCH domain-containing protein 59. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031625 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0009846 pollen germination Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0031037 myosin II filament disassembly Biological Process
GO:0032259 methylation Biological Process
GO:1903013 response to differentiation-inducing factor 1 Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005826 actomyosin contractile ring Cellular Component
GO:0048188 Set1C/COMPASS complex Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT2G26490
ath:AT3G49660
ddi:DDB_G0289115
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.447
Rank 1 · TkA08G118540 · TK1151
Cytoplasm0.413
Rank 2 · TkA08G118540 · TK1151
Cell membrane0.137
Rank 3 · TkA08G118540 · TK1151
Lysosome / Vacuole0.064
Rank 4 · TkA08G118540 · TK1151
Endoplasmic reticulum0.053
Rank 5 · TkA08G118540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10581Synapsin_N8-18 aa
PF24017Beta-prop_SCAP23-310 aa
PF23798Beta-prop_SPT841-153 aa
PF23342WDR90_beta-prop_4th48-110 aa
PF30552CFAP251_N50-151 aa
PF11715Beta-prop_Nup120_16058-233 aa
PF24782WD40_MABP1-WDR62_2nd69-148 aa
PF24105Beta-prop_CAF1B_HIR169-119 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G118540PF10581Synapsin_N8180.3411.3
TkA08G118540PF24017Beta-prop_SCAP233107.1e-1555.5
TkA08G118540PF23798Beta-prop_SPT8411532.5e-0524.1
TkA08G118540PF23342WDR90_beta-prop_4th481101.5e-0525.0
TkA08G118540PF30552CFAP251_N501510.002118.0
TkA08G118540PF11715Beta-prop_Nup120_160582337.3e-0522.3
TkA08G118540PF24782WD40_MABP1-WDR62_2nd691483.1e-0833.7
TkA08G118540PF24105Beta-prop_CAF1B_HIR1691199.2e-0832.2
TkA08G118540PF24817WD40_WDHD1_1st711681.1e-2591.1
TkA08G118540PF24807WD40_CDC20-Fz731552.9e-2486.6
TkA08G118540PF23381Beta-prop_IFT122_1st831585.4e-2898.8
TkA08G118540PF00400WD40841092.2e-43145.6
TkA08G118540PF25171Beta-prop_WDR36-Utp21_1st841571.4e-1248.4
TkA08G118540PF25048Beta-prop_TEP1_C851142.7e-2279.2
TkA08G118540PF24796WDR55891515.3e-2175.7
TkA08G118540PF25391WD40_Gbeta891474.3e-1762.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48716Arabidopsis thalianasp|O48716|JGB_ARATH Protein JINGUBANG57.500%Swiss-ProtHigh
Q9FE91Arabidopsis thalianasp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 6227.900%Swiss-ProtLow
Q9FKR9Arabidopsis thalianasp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 5929.400%Swiss-ProtLow

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