TkA08G115470 | RubberDandelionOmics

Gene overview

TkA08G115470

Reference: TK1151 Chr: Chr08 Coordinates: 30087267-30088674 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1231 bp · TkA08G115470|TK1151|cDNA

GTTGCAGACAGATACAACCATTTTAAAAAAATGCATTACCCTTGGACCATGGGGTATTTGTGCAGGGAAAGAGTGGGTTTATATCCCCGAAGGCTTTATTAAAAAGATTCGTATTTTACATGGATCAACGGGTATTCATGGCATTGAATTTCACAACGAATCTAGGCAAGGTGCAAGTCAAAAGTCCTATTTTGGTGGTGACGTTCGCTGTCGAACAGACATGGTAACAGATGTCATCTAAATATATACCTCTTGATGTC...

CDS

Download CDS FASTA

798 bp · TkA08G115470|TK1151|CDS

ATGAAATACACTTTTTCAATCGTGCAGATTTGCATTGACTACCCAGATGAGTACTTAACATCAATAAGTGGGACGGCTCATCATTCTAGCGTGATGTCTTTATGTTTCCATACAAATCAGAATCAGTATGGCCCGTATGGAGATTCTAATAAAGGCACCGCTTTCTCATTTGATGGTAAAGGTGGGCTGATTGTTGGATTTCATGGAGGTTTTGGCAATCAACGTATCTCTATAGGGATTTATGTGATGCCAAAAGCCCT...

Protein

Download Protein FASTA

265 aa · TkA08G115470|TK1151|PROTEIN

MKYTFSIVQICIDYPDEYLTSISGTAHHSSVMSLCFHTNQNQYGPYGDSNKGTAFSFDGKGGLIVGFHGGFGNQRISIGIYVMPKALAMDRSSTFEQSSRPEKCRRVSTVGIPRDLGPWGASEGKAWDDGVFYNIKQVRVHIGDPSNVIVGIQFKYVRKNGKCILSRLHGGLDGDVSEMEINLDGSEEYLTRISGFYGPVKEFDGLEGITSITFHTNKGKHGPFGHESGAGCVYFISTSSSGKVVGFHGRNDDFLTAIGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G115470`
TK1151 ID	TkA08G115470
OH-1004 ID	LXL04_031594
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.000
Protein coverage (%)	TK1151 96.226 / OH-1004 75.393 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G115470

Location Chr08:30087267-30088674 (-)

Description Similar to Agglutinin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19715`	Jacalin-related lectin 3.	No verified direct reference in this release
`At2g39310`	Inhibitor-type lectin that may regulate the correct polymerization and activation of BGLU23/PYK10 upon tissue damage.	Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn075
`At2g43730`	Jacalin-related lectin 24.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031594 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007157 heterophilic cell-cell adhesion Biological Process

GO:0045840 positive regulation of mitotic nuclear division Biological Process

GO:0051781 positive regulation of cell division Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005536 D-glucose binding Molecular Function

GO:0005537 D-mannose binding Molecular Function

GO:0008061 chitin binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0050839 cell adhesion molecule binding Molecular Function

GO:0070492 oligosaccharide binding Molecular Function

KEGG gene cross-reference

ath:AT1G19715

ath:AT1G73040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.692

Rank 1 · TkA08G115470 · TK1151

Nucleus0.374

Rank 2 · TkA08G115470 · TK1151

Cell membrane0.080

Rank 3 · TkA08G115470 · TK1151

Endoplasmic reticulum0.068

Rank 4 · TkA08G115470 · TK1151

Extracellular0.066

Rank 5 · TkA08G115470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01419Jacalin10-81 aa

PF28953CDIPTOSP17-23 aa

PF00400WD4025-41 aa

PF01419Jacalin116-261 aa

PF28953CDIPTOSP186-194 aa

PF00400WD40225-242 aa

PF28953CDIPTOSP254-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G115470	`PF01419`	Jacalin	10	81	1.1e-50	172.3
TkA08G115470	`PF28953`	CDIPTOSP	17	23	0.0022	18.0
TkA08G115470	`PF00400`	WD40	25	41	0.47	11.8
TkA08G115470	`PF01419`	Jacalin	116	261	1.1e-50	172.3
TkA08G115470	`PF28953`	CDIPTOSP	186	194	0.0022	18.0
TkA08G115470	`PF00400`	WD40	225	242	0.47	11.8
TkA08G115470	`PF28953`	CDIPTOSP	254	258	0.0022	18.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HQX1`	Arabidopsis thaliana	sp\|F4HQX1\|JAL3_ARATH Jacalin-related lectin 3	36.300%	Swiss-Prot	Medium
`O80950`	Arabidopsis thaliana	sp\|O80950\|JAL22_ARATH Jacalin-related lectin 22	27.200%	Swiss-Prot	Low
`Q84X07`	Arabidopsis thaliana	sp\|Q84X07\|JAL24_ARATH Jacalin-related lectin 24	31.900%	Swiss-Prot	Medium

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