TkA08G113030 | RubberDandelionOmics

Gene overview

TkA08G113030

Reference: TK1151 Chr: Chr08 Coordinates: 29445929-29449274 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2263 bp · TkA08G113030|TK1151|cDNA

CCTTCTTTCTTCCCATCCATTAAATTACACGTTCCTGCATCCCCAACCTGCTATCTTTGTCATCTACGATGTCTACATGTTATTTCATAATTGGAATCAAACCAGCATTTTCGGCTTCAATTTATTGATTTCTTATAAAATACAAAGCTCAAAACTTCATATACATTTTTAATTTCATATAAATAATAGTGGATTTATAAGAAAATAGAAAGCGAAATCGAGCAACTGCAAGCAACAACACGAAAGTTAATGGATGCTTT...

CDS

Download CDS FASTA

1389 bp · TkA08G113030|TK1151|CDS

ATGGCTACTTATTACCCAAGTTCCTATATTTCAACCCAACAACAACAACTTGATCCTTATCAAGAATCACCGTGTCCTCCGATCGATATAATGTACCAAAATCATAACTCAACCGACGCCTCTTTTTTGGAGCTTTTGAGCACTAATCAACACTCAAATTCCCAAAATCTTTCGAGTGATGAAAATCACCATAACTCGCAGTATCAAGAATTGTCGCTAAGTCTTGGAATGCAAATAACTTCTTCCATGGATTTGCCTTC...

Protein

Download Protein FASTA

462 aa · TkA08G113030|TK1151|PROTEIN

MATYYPSSYISTQQQQLDPYQESPCPPIDIMYQNHNSTDASFLELLSTNQHSNSQNLSSDENHHNSQYQELSLSLGMQITSSMDLPSFQYNYLNSHLQESNGHGHDSRGNKMENIDYLSFERAVNNQIPSGIVARIYNSKFLKPSQELLEEVANLHEAMKQLKMNKRNNVQKIGVERCDENSSKFDFQSVPIESATSSSCELSVSEKQDLQNKIVKLFSLLDEVDRKYRDYCQQLRIVEGSLDMVAGCGAARSYTALAHQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G113030`
TK1151 ID	TkA08G113030
OH-1004 ID	LXL04_031548
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 96.653 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G113030

Location Chr08:29445929-29449274 (+)

Description Similar to BLH7: BEL1-like homeodomain protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release
`At2g23760`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins.2007 · DOI: 10.1105/tpc.106.048769

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031548 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0048363 mucilage pectin metabolic process Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT2G23760

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930

Rank 1 · TkA08G113030 · TK1151

Cytoplasm0.160

Rank 2 · TkA08G113030 · TK1151

Cell membrane0.027

Rank 3 · TkA08G113030 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA08G113030 · TK1151

Mitochondrion0.013

Rank 5 · TkA08G113030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX47-69 aa

PF07526POX136-273 aa

PF30150YGR130C_N146-243 aa

PF05920Homeobox_KN338-377 aa

PF00046Homeodomain345-377 aa

PF30150YGR130C_N390-441 aa

PF07526POX421-421 aa

PF05920Homeobox_KN443-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G113030	`PF07526`	POX	47	69	4.2e-38	131.6
TkA08G113030	`PF07526`	POX	136	273	4.2e-38	131.6
TkA08G113030	`PF30150`	YGR130C_N	146	243	6.8	7.0
TkA08G113030	`PF05920`	Homeobox_KN	338	377	6.9e-20	71.3
TkA08G113030	`PF00046`	Homeodomain	345	377	1.8e-07	31.6
TkA08G113030	`PF30150`	YGR130C_N	390	441	6.8	7.0
TkA08G113030	`PF07526`	POX	421	421	4.2e-38	131.6
TkA08G113030	`PF05920`	Homeobox_KN	443	461	6.9e-20	71.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIW1`	Arabidopsis thaliana	sp\|Q9SIW1\|BLH7_ARATH BEL1-like homeodomain protein 7	51.600%	Swiss-Prot	Medium
`Q9FWS9`	Arabidopsis thaliana	sp\|Q9FWS9\|BLH3_ARATH BEL1-like homeodomain protein 3	45.500%	Swiss-Prot	Medium
`Q9FXG8`	Arabidopsis thaliana	sp\|Q9FXG8\|BLH10_ARATH BEL1-like homeodomain protein 10	48.300%	Swiss-Prot	Medium
`Q9SJ56`	Arabidopsis thaliana	sp\|Q9SJ56\|BLH1_ARATH BEL1-like homeodomain protein 1	45.700%	Swiss-Prot	Medium
`Q94KL5`	Arabidopsis thaliana	sp\|Q94KL5\|BLH4_ARATH BEL1-like homeodomain protein 4	46.000%	Swiss-Prot	Medium

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