TkA08G112570 | RubberDandelionOmics

Gene overview

TkA08G112570

Reference: TK1151 Chr: Chr08 Coordinates: 29293826-29298020 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

479 bp · TkA08G112570|TK1151|cDNA

CATCACCATAGCACCCACTCCGTATATATAAGAAAAACAAGAAACAAGAGCTTTGCCTAATTTCAAATATCTGTATGAGGTTTGTTGGGTCAAACTGTCGAAGATCCATGGGTAAGAACTGGGCTGGCGTTGGATCCGTTTATCTATTAGTGTGTTTGATTTTTGAAGCTGTAAGATTATGCAATAGAGGAATCAGCAGTAGCTATGCCAGAAGCAATGATATTAGTGCTGATATGCCATTAAACAGCGACGTTTTTGCA...

CDS

Download CDS FASTA

405 bp · TkA08G112570|TK1151|CDS

ATGAGGTTTGTTGGGTCAAACTGTCGAAGATCCATGGGTAAGAACTGGGCTGGCGTTGGATCCGTTTATCTATTAGTGTGTTTGATTTTTGAAGCTGTAAGATTATGCAATAGAGGAATCAGCAGTAGCTATGCCAGAAGCAATGATATTAGTGCTGATATGCCATTAAACAGCGACGTTTTTGCACTTCCGCCTGGTTATAATGCTCCTCAACAGGTTCACATGACACAAGGGGATCATGAAGGGAAGGGAGTGATTAT...

Protein

Download Protein FASTA

135 aa · TkA08G112570|TK1151|PROTEIN

MRFVGSNCRRSMGKNWAGVGSVYLLVCLIFEAVRLCNRGISSSYARSNDISADMPLNSDVFALPPGYNAPQQVHMTQGDHEGKGVIISWVTPNEPGSSEVTYWAENSDIKKHAVGTVVTYKYYNYSSPYIHHCTI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G112570`
TK1151 ID	TkA08G112570
OH-1004 ID	LXL04_031543
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.500
Protein coverage (%)	TK1151 91.852 / OH-1004 25.051 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G112570

Location Chr08:29293826-29298020 (+)

Description Similar to PAP2: Purple acid phosphatase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27190`	Fe(3+)-Zn(2+) purple acid phosphatase 12.	No verified direct reference in this release
`At2g16430`	Purple acid phosphatase 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031543 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0030145 manganese ion binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G16430

ath:AT2G27190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.354

Rank 1 · TkA08G112570 · TK1151

Lysosome / Vacuole0.243

Rank 2 · TkA08G112570 · TK1151

Endoplasmic reticulum0.161

Rank 3 · TkA08G112570 · TK1151

Extracellular0.135

Rank 4 · TkA08G112570 · TK1151

Cytoplasm0.129

Rank 5 · TkA08G112570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16656Pur_ac_phosph_N70-135 aa

PF14743DNA_ligase_OB_2111-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G112570	`PF16656`	Pur_ac_phosph_N	70	135	8.2e-11	43.1
TkA08G112570	`PF14743`	DNA_ligase_OB_2	111	127	0.23	12.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38924`	Arabidopsis thaliana	sp\|Q38924\|PPA12_ARATH Fe(3+)-Zn(2+) purple acid phosphatase 12	57.000%	Swiss-Prot	High
`Q9SIV9`	Arabidopsis thaliana	sp\|Q9SIV9\|PPA10_ARATH Purple acid phosphatase 10	56.900%	Swiss-Prot	High

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