TkA08G109460 | RubberDandelionOmics

Gene overview

TkA08G109460

Reference: TK1151 Chr: Chr08 Coordinates: 28451848-28455680 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2687 bp · TkA08G109460|TK1151|cDNA

TTTCTGAATACTATTTGATAACATAGATGCTCAAATTATATTTTTCCTCTGTTTATAAAGAGAAAAAATAAAACCTTGCAATTTCTGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTGTATCACACAAATACAGAAGACAGCCTCCTGTCATCCTGTGATTCCTTATCTTTTTCTCGTCGTCTATCTCCTCCACCGTCATTGGCTACTCTCGCCACCTCCTTACTTCTACTCTCTAAAAACTGCCACCCATAAGC...

CDS

Download CDS FASTA

1587 bp · TkA08G109460|TK1151|CDS

ATGAATGGGAGTGATATGTACAGGGTAGAAGATAGAGATAAGAGAAAGAGGTTTGGGATTGGGATTGGAATTGGAATTGGAATTGGGATTAGGGCAATGGGATTGAAGACATCAGGGGAAAGTAGAGTAGAGAAATTAAAGGCAAATGCAAGGTCTCCGAAAATGAAGTTATGGATAATTAGGGCAACAACAATGGTGTTGTTATGGACCTGTTTAGTTCAGTTAACAGCTTTAGGGGATACATGGGGACCTAGGGTTTT...

Protein

Download Protein FASTA

528 aa · TkA08G109460|TK1151|PROTEIN

MNGSDMYRVEDRDKRKRFGIGIGIGIGIGIRAMGLKTSGESRVEKLKANARSPKMKLWIIRATTMVLLWTCLVQLTALGDTWGPRVLKGWPSSFTQDSRSLDVKFLPTSPARVLPPKRVYQNNGYLMVSCNGGLNQMRSAICDMVAISRFLNVTLIVPELDKTSFWADPSEFEDIFDVNHFITSLRDEVRILKQLPPRLKRKMELGFVHTMPPISWSDISYYHNQILPLIKKFKVVHLNRTDARLANNGQPLDLQKLRCR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G109460`
TK1151 ID	TkA08G109460
OH-1004 ID	LXL04_031484
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G109460

Location Chr08:28451848-28455680 (-)

Description Similar to RRT1: Rhamnogalacturonan I rhamnosyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15740`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I.	Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family.2018 · DOI: 10.1038/s41477-018-0217-7
`At3g02250`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I (By similarity).	No verified direct reference in this release
`At1g14020`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I (By similarity).	No verified direct reference in this release
`At2g03280`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I (By similarity).	No verified direct reference in this release
`At1g22460`	O-fucosyltransferase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031484 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0010214 seed coat development Biological Process

GO:0010395 rhamnogalacturonan I metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14020

ath:AT1G22460

ath:AT2G03280

ath:AT3G02250

ath:AT5G15740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.807

Rank 1 · TkA08G109460 · TK1151

Endoplasmic reticulum0.076

Rank 2 · TkA08G109460 · TK1151

Cell membrane0.061

Rank 3 · TkA08G109460 · TK1151

Cytoplasm0.050

Rank 4 · TkA08G109460 · TK1151

Extracellular0.041

Rank 5 · TkA08G109460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20647DUF68088-29 aa

PF10250O-FucT125-445 aa

PF20647DUF6808175-207 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G109460	`PF20647`	DUF6808	8	29	0.34	12.1
TkA08G109460	`PF10250`	O-FucT	125	445	3.7e-104	349.8
TkA08G109460	`PF20647`	DUF6808	175	207	0.34	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V398`	Arabidopsis thaliana	sp\|Q4V398\|RRT1_ARATH Rhamnogalacturonan I rhamnosyltransferase 1	73.600%	Swiss-Prot	High
`Q93ZR8`	Arabidopsis thaliana	sp\|Q93ZR8\|RRT2_ARATH Rhamnogalacturonan I rhamnosyltransferase 1	70.200%	Swiss-Prot	High
`Q6NQ51`	Arabidopsis thaliana	sp\|Q6NQ51\|RRT4_ARATH Rhamnogalacturonan I rhamnosyltransferase 1	62.400%	Swiss-Prot	High
`Q6E279`	Arabidopsis thaliana	sp\|Q6E279\|RRT3_ARATH Rhamnogalacturonan I rhamnosyltransferase 4	60.700%	Swiss-Prot	High
`B7ZWR7`	Arabidopsis thaliana	sp\|B7ZWR7\|OFUT7_ARATH O-fucosyltransferase 7	47.200%	Swiss-Prot	Medium

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