TkA08G108000 | RubberDandelionOmics

Gene overview

TkA08G108000

Reference: TK1151 Chr: Chr08 Coordinates: 28093273-28095909 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1524 bp · TkA08G108000|TK1151|cDNA

CAACCAAATGCCCCTTGTTTTCAAGTTCACATATCGTGAGGAGGGGAGAAAGTGCTGAATTTGATATCGTGTAGATTCCTCGCATTTCGAGGCTAACGTCGGCCTCGTGAGCCTCCTCCTCCGTCCAAAACCACCCTAAAACCCTAAATCGACGACGTAAGATAGAATCATAGAAAGAACTGTTTAAAAAGCAATTGCACAATCTCATGGCGGCCACCAGCAGTAGCAGTGCAGCTTCTGAAGAAATTCAAGGAACAAAT...

CDS

Download CDS FASTA

1104 bp · TkA08G108000|TK1151|CDS

ATGGCGGCCACCAGCAGTAGCAGTGCAGCTTCTGAAGAAATTCAAGGAACAAATTCTTCAGCAACACTTTTTCTACCAAACTCGACACACAATCAATTCTTTGTTTGGAGAGAGTTCTTATGGGGAGCCCTTGCTGGTGGCTTTGGGGAAGGGATGATGCACCCAATCGATACTGTGAAAACTCGAATCCAAAGTCAAGCCATCTTGACTCAATCCCAGAAACAAAAGAGTATAGTACAGATGGTGAAAGCTGTCTGGGG...

Protein

Download Protein FASTA

367 aa · TkA08G108000|TK1151|PROTEIN

MAATSSSSAASEEIQGTNSSATLFLPNSTHNQFFVWREFLWGALAGGFGEGMMHPIDTVKTRIQSQAILTQSQKQKSIVQMVKAVWGADGLRGFYRGVAPGVTGSLVTGATYFGVIESTKKWMEETHPNLGGHWAHFIAGALGDTLGSFIYVPCEVIKQRMQVQGTRKYWTSVVMKDAALDSTMYAYYSGMFQAGCSIWKDQGPKGLYAGYWSTLVRDVPFAGLMVTCYEALKEATEYGRQKWFPNSSFHVNSSFEGLVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G108000`
TK1151 ID	TkA08G108000
OH-1004 ID	LXL04_031464
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	89.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G108000

Location Chr08:28093273-28095909 (-)

Description Similar to SAMC1: S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39460`	Transporter involved in exchange reactions through membranes.	Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.2006 · DOI: 10.1104/pp.106.086975 Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development.2006 · DOI: 10.1105/tpc.105.040741
`At1g34065`	Probable S-adenosylmethionine (SAM) transporter able to catalyze both uniport and exchange reactions through membranes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031464 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0015693 magnesium ion transport Biological Process

GO:0015805 S-adenosyl-L-methionine transport Biological Process

GO:0048250 iron import into the mitochondrion Biological Process

GO:1990616 magnesium ion export from mitochondrion Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

KEGG gene cross-reference

ath:AT1G34065

ath:AT4G39460

ddi:DDB_G0269394

ddi:DDB_G0269470

sce:YMR166C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.881

Rank 1 · TkA08G108000 · TK1151

Cytoplasm0.042

Rank 2 · TkA08G108000 · TK1151

Plastid0.039

Rank 3 · TkA08G108000 · TK1151

Nucleus0.025

Rank 4 · TkA08G108000 · TK1151

Cell membrane0.020

Rank 5 · TkA08G108000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153Mito_carr34-124 aa

PF09722Xre_MbcA_ParS_C111-133 aa

PF00153Mito_carr134-235 aa

PF00153Mito_carr253-341 aa

PF09722Xre_MbcA_ParS_C273-280 aa

PF09722Xre_MbcA_ParS_C296-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G108000	`PF00153`	Mito_carr	34	124	1.6e-66	220.8
TkA08G108000	`PF09722`	Xre_MbcA_ParS_C	111	133	0.32	11.7
TkA08G108000	`PF00153`	Mito_carr	134	235	1.6e-66	220.8
TkA08G108000	`PF00153`	Mito_carr	253	341	1.6e-66	220.8
TkA08G108000	`PF09722`	Xre_MbcA_ParS_C	273	280	0.32	11.7
TkA08G108000	`PF09722`	Xre_MbcA_ParS_C	296	315	0.32	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AG6`	Arabidopsis thaliana	sp\|Q94AG6\|SAMC1_ARATH S-adenosylmethionine carrier 1, chloroplastic/mitochondrial	33.300%	Swiss-Prot	Medium
`F4HT41`	Arabidopsis thaliana	sp\|F4HT41\|SAMC2_ARATH Probable S-adenosylmethionine carrier 2, chloroplastic	32.300%	Swiss-Prot	Medium

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