TkA08G106920 | RubberDandelionOmics

Gene overview

TkA08G106920

Reference: TK1151 Chr: Chr08 Coordinates: 27833627-27837131 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2358 bp · TkA08G106920|TK1151|cDNA

GTGGTCGGCCCACGTATCCCCTAGATACATATCTTATTCTCAAAATATCTAAAAATATCTACGGCCTTTCCTCTTTGAGAGTCCTTTTGGTGACGTGGCCTACTACCTATCCTTAATTCTTTAACCTCTCACGCGCTCTTTTTTGCACTTTTCCTCCACGTCTGCCCTTCGTCTAACGTACGCCCCCCACACTTAACGGCCCAGATTAAACTTTCGTCCCGATCGCATTTTAGTCTCCCCGGCCACCAAAAAAGCAACAT...

CDS

Download CDS FASTA

1542 bp · TkA08G106920|TK1151|CDS

ATGTGGAAGATGGATCCAAATGAAATTATGATGAGCAGAGGTGGCGGTGGAGGAAATACTAATGGAACGACAGGAGAAGGTTTTATTGATCGAAGTAAAGTGAGAATTCTACTTTGCGACAATGATACAAAGAGCTCGCAAGAGGTTTTTAATCTTCTATGTAAATGCTCCTATCAAGTGACATCAGCAAGATCACCCAGGCAAGTGATTGATGCCTTGAACGCTGAGGGACCTGACATTGATATTATTCTTTCTGAAGT...

Protein

Download Protein FASTA

513 aa · TkA08G106920|TK1151|PROTEIN

MWKMDPNEIMMSRGGGGGNTNGTTGEGFIDRSKVRILLCDNDTKSSQEVFNLLCKCSYQVTSARSPRQVIDALNAEGPDIDIILSEVDLPMPKGFKMLKYIMRDKDLRRIPVIMMSAQDEVALVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNIMNCEFDLVQSDPSDANTNSTTLFSDDTDDNKSRKSSNPEISLSIPMESENNAIITPPMIVNTRLVNLSDNRPNVPEINEQQRGKVTFGPKKSEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G106920`
TK1151 ID	TkA08G106920
OH-1004 ID	LXL04_031440
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G106920

Location Chr08:27833627-27837131 (+)

Description Similar to PRR1: Two-component response regulator-like PRR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61380`	Controls photoperiodic flowering response.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043 A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.2009 · DOI: 10.1126/science.1167206
`At2g46790`	Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043
`At5g24470`	Transcriptional repressor of CCA1 and LHY, thereby controlling photoperiodic flowering response.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043
`At5g60100`	Controls photoperiodic flowering response.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0618200`	Controls photoperiodic flowering response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031440 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010031 circumnutation Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048511 rhythmic process Biological Process

KEGG gene cross-reference

ath:AT2G46790

ath:AT5G61380

dosa:Os02g0618200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.779

Rank 1 · TkA08G106920 · TK1151

Cytoplasm0.226

Rank 2 · TkA08G106920 · TK1151

Cell membrane0.077

Rank 3 · TkA08G106920 · TK1151

Endoplasmic reticulum0.030

Rank 4 · TkA08G106920 · TK1151

Lysosome / Vacuole0.016

Rank 5 · TkA08G106920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29701TP_0454_N34-119 aa

PF00072Response_reg36-147 aa

PF09026CENP-B_dimeris262-284 aa

PF06203CCT434-476 aa

PF09425Jas_motif434-456 aa

PF09026CENP-B_dimeris488-510 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G106920	`PF29701`	TP_0454_N	34	119	0.002	18.6
TkA08G106920	`PF00072`	Response_reg	36	147	7.9e-18	65.4
TkA08G106920	`PF09026`	CENP-B_dimeris	262	284	4.2	8.6
TkA08G106920	`PF06203`	CCT	434	476	1.6e-16	60.8
TkA08G106920	`PF09425`	Jas_motif	434	456	0.00049	20.5
TkA08G106920	`PF09026`	CENP-B_dimeris	488	510	4.2	8.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LKL2`	Arabidopsis thaliana	sp\|Q9LKL2\|APRR1_ARATH Two-component response regulator-like APRR1	43.600%	Swiss-Prot	Medium
`Q8L500`	Arabidopsis thaliana	sp\|Q8L500\|APRR9_ARATH Two-component response regulator-like APRR9	28.700%	Swiss-Prot	Low
`Q6LA42`	Arabidopsis thaliana	sp\|Q6LA42\|APRR5_ARATH Two-component response regulator-like APRR5	28.400%	Swiss-Prot	Low
`Q9LVG4`	Arabidopsis thaliana	sp\|Q9LVG4\|APRR3_ARATH Two-component response regulator-like APRR3	30.500%	Swiss-Prot	Medium
`Q689G9`	Oryza sativa subsp. japonica	sp\|Q689G9\|PRR1_ORYSJ Two-component response regulator-like PRR1	45.700%	Swiss-Prot	Medium

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