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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G104770
Reference: TK1151 Chr: Chr08 Coordinates: 27196918-27204147 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

624 bp · TkA08G104770|TK1151|cDNA

TAAATATCCTTCTCCGCCCTCCATGAATCATTCTTGATGCTACGCTCTTCGGTAGATCCCCGAGAGCGAAAAACGAACCCCTCTCAAATGAGTGTGTGAAGCGAAAAACCTTCACGATCAATCCAACTTTTAAATATATTCCATAGATCGATTCAAATTTTAAGTCAAAATCATAAGCTCACTCAATCCTTTTCAAGTATTTCGATACCCTAGTTTTCTTGACTTTCTTCTGCAAAATTTGGCCGATCTGGCTATTGAGC...

CDS

Download CDS FASTA

5421 bp · TkA08G104770|TK1151|CDS

ATGGATATACGGTTCCCTCACTCTCCAGCAGAAGTTGCAAAAGTCCGGCTGGTTCAGTTCGGCATCCTCAGTCCTGATGAAATTAGACAAATGTCTGTCGTGCATATAGAGCATGGCGAAACGACAGAAAGGGGGAAGCCAAAGGTAGCTGGACTTAGTGACCCAAGGCTTGGGACAATCGATAGGAAGATGAAATGCGAGACATGTATGGCAAATATGGCCGAGTGCCCTGGTCATTTTGGGCATCTCGAGCTTGCAAA...

Protein

Download Protein FASTA

1806 aa · TkA08G104770|TK1151|PROTEIN

MDIRFPHSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHKFKQAQKIRNPKNRLKKILDACKSKTKCDGGDEIDSQNQDTDEPVKKSRGGCGAQQPKITIEGMKMVAEYKLQKKKSDDSEQLPEPAERKQQLSAEKVLSVLKRVSDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G104770
TK1151 IDTkA08G104770
OH-1004 IDLXL04_031397
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.000
Protein coverage (%)TK1151 85.548 / OH-1004 85.792
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G104770
LocationChr08:27196918-27204147 (+)
DescriptionSimilar to NRPB1: DNA-directed RNA polymerase II subunit RPB1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g35800 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031397 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process
GO:0006369 termination of RNA polymerase II transcription Biological Process
GO:0042789 mRNA transcription by RNA polymerase II Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000791 euchromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005665 RNA polymerase II, core complex Cellular Component
GO:0005700 polytene chromosome Cellular Component
GO:0005703 polytene chromosome puff Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT4G35800
bta:282312
ddi:DDB_G0279193
dme:Dmel_CG1554
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.868
Rank 1 · TkA08G104770 · TK1151
Cytoplasm0.191
Rank 2 · TkA08G104770 · TK1151
Cell membrane0.034
Rank 3 · TkA08G104770 · TK1151
Endoplasmic reticulum0.026
Rank 4 · TkA08G104770 · TK1151
Mitochondrion0.016
Rank 5 · TkA08G104770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04997RNA_pol_Rpb1_114-350 aa
PF05334DUF719115-148 aa
PF00623RNA_pol_Rpb1_2193-241 aa
PF00623RNA_pol_Rpb1_2352-520 aa
PF05001RNA_pol_Rpb1_R485-490 aa
PF04983RNA_pol_Rpb1_3523-687 aa
PF09090MIF4G_like_2674-744 aa
PF05334DUF719691-785 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G104770PF04997RNA_pol_Rpb1_1143502e-115386.2
TkA08G104770PF05334DUF7191151487.17.5
TkA08G104770PF00623RNA_pol_Rpb1_21932413.4e-72242.8
TkA08G104770PF00623RNA_pol_Rpb1_23525203.4e-72242.8
TkA08G104770PF05001RNA_pol_Rpb1_R4854902.2e-1969.3
TkA08G104770PF04983RNA_pol_Rpb1_35236874.8e-52176.8
TkA08G104770PF09090MIF4G_like_26747440.2611.4
TkA08G104770PF05334DUF7196917857.17.5
TkA08G104770PF05010TACC_C6927570.2611.7
TkA08G104770PF00623RNA_pol_Rpb1_26947413.4e-72242.8
TkA08G104770PF05000RNA_pol_Rpb1_47148188.3e-39132.5
TkA08G104770PF04998RNA_pol_Rpb1_582514153.6e-103345.4
TkA08G104770PF05010TACC_C8588770.2611.7
TkA08G104770PF04992RNA_pol_Rpb1_689110752.5e-68230.4
TkA08G104770PF21184HAT1_C_fung8919140.2112.3
TkA08G104770PF04990RNA_pol_Rpb1_7116012941.2e-53181.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P18616Arabidopsis thalianasp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit RPB187.900%Swiss-ProtHigh

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