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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G104370
Reference: TK1151 Chr: Chr08 Coordinates: 27092367-27093867 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1188 bp · TkA08G104370|TK1151|cDNA

ATGTTGTCGCCTAACAGCAGGCTTCGTGTGAAATATACCTCCTCTCTTAAATTATCGTTCTACAACCTCACGACCACCACGCCTCCTCCCTCCCCGCCGCCGCTAGTAGAGGATGATGCCGCCACTCTTTCCAGCCACATCCTAAAGTTAAATCCACAAGCCCTAACTCAAAATCTAGAAACCAATTCTGTCTGCTGGACTCCCGACCTGGTGAACAAAATCCTAAAACGCCTTTGGAATCATGGCCCCAAAGCCCTCCA...

CDS

Download CDS FASTA

1188 bp · TkA08G104370|TK1151|CDS

ATGTTGTCGCCTAACAGCAGGCTTCGTGTGAAATATACCTCCTCTCTTAAATTATCGTTCTACAACCTCACGACCACCACGCCTCCTCCCTCCCCGCCGCCGCTAGTAGAGGATGATGCCGCCACTCTTTCCAGCCACATCCTAAAGTTAAATCCACAAGCCCTAACTCAAAATCTAGAAACCAATTCTGTCTGCTGGACTCCCGACCTGGTGAACAAAATCCTAAAACGCCTTTGGAATCATGGCCCCAAAGCCCTCCA...

Protein

Download Protein FASTA

395 aa · TkA08G104370|TK1151|PROTEIN

MLSPNSRLRVKYTSSLKLSFYNLTTTTPPPSPPPLVEDDAATLSSHILKLNPQALTQNLETNSVCWTPDLVNKILKRLWNHGPKALQFFKLLERHPTYTHSATSFDHAIDIAARLRDYKTVWTLVGRMRKQRLGPTPKTFAIITERYVSAGKPDKAVRVFLSMHDHGCQQDLSSFNTFLDVLCKSKRAEMAYNLFKVLKRRFKADTISYNIIANGFCLIKRTPRALEVLREMVESGLEPTLKTYNVILNGYFKAGQIKEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G104370
TK1151 IDTkA08G104370
OH-1004 IDLXL04_031388
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)61.100
Protein coverage (%)TK1151 94.684 / OH-1004 97.154
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G104370
LocationChr08:27092367-27093867 (+)
DescriptionSimilar to OTP43: Pentatricopeptide repeat-containing protein At1g74900, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74900 Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I).
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.054841
At2g13420 Pentatricopeptide repeat-containing protein At2g13420, mitochondrial. No verified direct reference in this release
At5g11310 Pentatricopeptide repeat-containing protein At5g11310, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031388 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74900
ath:AT1G77360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.841
Rank 1 · TkA08G104370 · TK1151
Plastid0.093
Rank 2 · TkA08G104370 · TK1151
Nucleus0.045
Rank 3 · TkA08G104370 · TK1151
Cytoplasm0.028
Rank 4 · TkA08G104370 · TK1151
Cell membrane0.010
Rank 5 · TkA08G104370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08579RPM254-77 aa
PF01535PPR84-94 aa
PF29070MSC6_N93-260 aa
PF13429TPR_15100-231 aa
PF13041PPR_2104-143 aa
PF17177PPR_long104-201 aa
PF13812PPR_3105-145 aa
PF01535PPR109-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G104370PF08579RPM254770.1413.2
TkA08G104370PF01535PPR84941.6e-31107.1
TkA08G104370PF29070MSC6_N932601.1e-1455.1
TkA08G104370PF13429TPR_151002310.2911.3
TkA08G104370PF13041PPR_21041435.2e-50168.1
TkA08G104370PF17177PPR_long1042015.5e-1246.2
TkA08G104370PF13812PPR_31051452.4e-29101.9
TkA08G104370PF01535PPR1091311.6e-31107.1
TkA08G104370PF23276TPR_241101868.4e-1452.3
TkA08G104370PF10037MRP-S271461940.2311.1
TkA08G104370PF13041PPR_21471715.2e-50168.1
TkA08G104370PF01535PPR1471681.6e-31107.1
TkA08G104370PF13812PPR_31471822.4e-29101.9
TkA08G104370PF12854PPR_11491633.4e-33113.8
TkA08G104370PF29978ATP18_TPR1541850.0001322.6
TkA08G104370PF06239ECSIT_N1621860.01914.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7R4Arabidopsis thalianasp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial35.100%Swiss-ProtMedium
Q0WP85Arabidopsis thalianasp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial34.600%Swiss-ProtMedium
Q9LFM6Arabidopsis thalianasp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310, mitochondrial22.500%Swiss-ProtLow

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