Gene Card
Gene overview
cDNA / CDS / Protein Sequences
354 bp · TkA08G100820|TK1151|cDNA
ATGTACGCGCATTATCCTCGAAGAGTTAAATGCATAACCAAGGGAAATGTATTTCTGGATATACTTCACCATGATTGGAAACCCGTGCTTACAATAACCCAAGTTGTCGATGGAATTTACCATCTCTTCACAGCAACCTTCACCTCAGTTGACTCCTATTTATTTGATCGATCCATTGTTGATTCTCAAAACATTGAGAGTTTAATGAATGATGTTGGTGCTTCATCCTCTAGGGAAAAGATCTACATGCCAAAAGGTTC...
354 bp · TkA08G100820|TK1151|CDS
ATGTACGCGCATTATCCTCGAAGAGTTAAATGCATAACCAAGGGAAATGTATTTCTGGATATACTTCACCATGATTGGAAACCCGTGCTTACAATAACCCAAGTTGTCGATGGAATTTACCATCTCTTCACAGCAACCTTCACCTCAGTTGACTCCTATTTATTTGATCGATCCATTGTTGATTCTCAAAACATTGAGAGTTTAATGAATGATGTTGGTGCTTCATCCTCTAGGGAAAAGATCTACATGCCAAAAGGTTC...
Protein
Download Protein FASTA117 aa · TkA08G100820|TK1151|PROTEIN
MYAHYPRRVKCITKGNVFLDILHHDWKPVLTITQVVDGIYHLFTATFTSVDSYLFDRSIVDSQNIESLMNDVGASSSREKIYMPKGSKNLKLKRTYVYICDMDTIYPSERIRISENE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G100820 |
|---|---|
| TK1151 ID | TkA08G100820 |
| OH-1004 ID | LXL04_007085 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 84.783Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G100820 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:26154374-26154974 (+) | |||||||||
| Description | Similar to RCE2: Probable NEDD8-conjugating enzyme Ubc12-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009733 response to auxin Biological Process GO:0036211 protein modification process Biological Process GO:0045116 protein neddylation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0016604 nuclear body Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0019787 ubiquitin-like protein transferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G18600 ath:AT4G36800 mmu:22192 xla:446800 xtr:394553 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00179UQ_con13-46 aaPF17846XRN_M15-83 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G100820 | PF00179 | UQ_con | 13 | 46 | 7e-06 | 26.4 |
| TkA08G100820 | PF17846 | XRN_M | 15 | 83 | 0.081 | 12.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.