TkA08G100800 | RubberDandelionOmics

Gene overview

TkA08G100800

Reference: TK1151 Chr: Chr08 Coordinates: 26145315-26150129 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2318 bp · TkA08G100800|TK1151|cDNA

CTGCAATCGATTACTACGTTACACACATGTGTATATATGCGTAATTGCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAAACACAAACACATATGAGAACCTTCCAGTGAGAGAGAGAATAGAGACAGTGGGAGGAGCACTGGTATAAATCAAGTGCTCGTCCGACGTCGAAAGCACAAGAATTTGTGAGTGTCTTTTTCACTTTCTCAT...

CDS

Download CDS FASTA

1347 bp · TkA08G100800|TK1151|CDS

ATGGCCCCTGGTGGACTCCCTTACTTTGACCCCGAATATGAAAGCTTAAGCATCAGAATTAACCCTCCTAGGGTTTCTGTCGATAACCATACTTGCGTTGACTGTACTTTAGTCAAGGTAGACAGTGTAAACAAACCAGGAATACTGCTGGAAGTTGTCCAAATTTTAGCAGACCTCGATCTCATTATTACTAAAGCTTACATTTCCTCTGATGGCGGATGGTTCATGGATGTGTTTCATGTTACGGATCAACAAGGAAA...

Protein

Download Protein FASTA

448 aa · TkA08G100800|TK1151|PROTEIN

MAPGGLPYFDPEYESLSIRINPPRVSVDNHTCVDCTLVKVDSVNKPGILLEVVQILADLDLIITKAYISSDGGWFMDVFHVTDQQGNKITDKMTIDYIEKALGPKGHTSDERKTWPAKRVGVHTMGDYTAIELVGRDRPGLLSEISAVIANLKINVAAAEVWTHNTKIACVVYLNGDTTTRGVDDPTRLSTMEEQLKNILRVCGDDDKVAHTNFSMGLTHIDRRLHQMLFAEMDYERKGLKNEADCAAFLELKISVDRCA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G100800`
TK1151 ID	TkA08G100800
OH-1004 ID	LXL04_031305
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G100800

Location Chr08:26145315-26150129 (+)

Description Similar to ACR3: ACT domain-containing protein ACR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76990`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484
`At1g69040`	May bind amino acids.	No verified direct reference in this release
`At2g03730`	May bind amino acids.	No verified direct reference in this release
`At5g25320`	May bind amino acids.	No verified direct reference in this release
`At3g01990`	May bind amino acids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031305 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006521 regulation of amino acid metabolic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016597 amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G69040

ath:AT1G76990

ath:AT2G03730

ath:AT3G01990

ath:AT5G25320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.468

Rank 1 · TkA08G100800 · TK1151

Nucleus0.396

Rank 2 · TkA08G100800 · TK1151

Cell membrane0.173

Rank 3 · TkA08G100800 · TK1151

Lysosome / Vacuole0.053

Rank 4 · TkA08G100800 · TK1151

Endoplasmic reticulum0.048

Rank 5 · TkA08G100800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24931ACT_ACR9_3rd25-96 aa

PF26956ACT_ACR_D132-105 aa

PF24914ACR10_N34-92 aa

PF13840ACT_735-58 aa

PF22754bHLH-TF_ACT-like_plant36-90 aa

PF01842ACT37-86 aa

PF13291ACT_438-70 aa

PF22629ACT_AHAS_ss42-66 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G100800	`PF24931`	ACT_ACR9_3rd	25	96	1.1e-17	64.6
TkA08G100800	`PF26956`	ACT_ACR_D1	32	105	3.3e-52	175.0
TkA08G100800	`PF24914`	ACR10_N	34	92	3e-15	56.1
TkA08G100800	`PF13840`	ACT_7	35	58	0.0066	17.0
TkA08G100800	`PF22754`	bHLH-TF_ACT-like_plant	36	90	4.2e-14	53.1
TkA08G100800	`PF01842`	ACT	37	86	1.7e-38	130.6
TkA08G100800	`PF13291`	ACT_4	38	70	6.6e-14	53.0
TkA08G100800	`PF22629`	ACT_AHAS_ss	42	66	3.8e-09	37.3
TkA08G100800	`PF24926`	ACT_ACR9_C	44	69	1.6e-10	41.5
TkA08G100800	`PF13740`	ACT_6	44	60	9.8e-10	38.9
TkA08G100800	`PF22754`	bHLH-TF_ACT-like_plant	120	166	4.2e-14	53.1
TkA08G100800	`PF24914`	ACR10_N	125	176	3e-15	56.1
TkA08G100800	`PF24931`	ACT_ACR9_3rd	128	198	1.1e-17	64.6
TkA08G100800	`PF13840`	ACT_7	128	166	0.0066	17.0
TkA08G100800	`PF26956`	ACT_ACR_D1	129	159	3.3e-52	175.0
TkA08G100800	`PF13291`	ACT_4	129	164	6.6e-14	53.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49285`	Arabidopsis thaliana	sp\|O49285\|ACR3_ARATH ACT domain-containing protein ACR3	69.000%	Swiss-Prot	High
`Q8LJW3`	Arabidopsis thaliana	sp\|Q8LJW3\|ACR4_ARATH ACT domain-containing protein ACR4	55.000%	Swiss-Prot	High
`Q9ZPQ8`	Arabidopsis thaliana	sp\|Q9ZPQ8\|ACR5_ARATH ACT domain-containing protein ACR5	52.400%	Swiss-Prot	High
`F4JWR0`	Arabidopsis thaliana	sp\|F4JWR0\|ACR2_ARATH ACT domain-containing protein ACR2	46.300%	Swiss-Prot	Medium
`Q9SGA0`	Arabidopsis thaliana	sp\|Q9SGA0\|ACR6_ARATH ACT domain-containing protein ACR6	51.300%	Swiss-Prot	High

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