TkA08G097720 | RubberDandelionOmics

Gene overview

TkA08G097720

Reference: TK1151 Chr: Chr08 Coordinates: 25282273-25286718 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2483 bp · TkA08G097720|TK1151|cDNA

GTTTGGGGCGGGGGTTTGACCAGAGCAAAGATGGCGTCTTTGGGTTTGGGCTATCGTATGCTGGGACACTTGCTTCTTCCTCGTTTGTAGCGTCACCGATTGATTTACAGACTTCTGGTATCCCGCAACCCAGCAATTCCATCGTCGTATGCTTCGCTGTTCCGATCATCGGCCAGTTTGTTGAGACGGGGCTGCACTTCGTGTAATTAACTGTTTAGGGGAACTTGTTGAAGCATCAGCGAGGTATTCGAGTCGTTTGG...

CDS

Download CDS FASTA

1950 bp · TkA08G097720|TK1151|CDS

ATGGGTGGGATATGCTCAAGGAGATCCACCCAAGACAACATAGAAAACGGAACTTTTCCTCATGTTAACGGACTAAATTATGGTTCTGGAATGGTTTATCAATCTCGATTGCCTGCACAATCGGCAAATGAAGAATCTACACCTACTGGAGAAACCATAGATAATAAGAGAACCTTAAGAGAACCATTTACGTTTCCAGAGATGAATGATGCTGCTCCATATACAATGTCTGATGCTGATGATGGGATTCCTCGTTTATC...

Protein

Download Protein FASTA

649 aa · TkA08G097720|TK1151|PROTEIN

MGGICSRRSTQDNIENGTFPHVNGLNYGSGMVYQSRLPAQSANEESTPTGETIDNKRTLREPFTFPEMNDAAPYTMSDADDGIPRLSRAISHKSRSTKSNIAAVTKVSEVSSLLGKAGTAGFGKAVEVLDTLGSSMTSLHTSSGFVSGAVTKGNKITILSFEVANTIVKGANLMESLSKDNIKHLKEVVMPSEGVQRLISKDMDELLRIAAADKREELKIFSGEVVRFGNRCKDPQWHNLDRYFEKLGSELIPQKQLKEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G097720`
TK1151 ID	TkA08G097720
OH-1004 ID	LXL04_022329
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	46.800
Protein coverage (%)	TK1151 94.145 / OH-1004 97.092 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G097720

Location Chr08:25282273-25286718 (+)

Description Similar to PSI2: Protein PSK SIMULATOR 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g34320`	Promotes seedling growth probably via the regulation of phytosulfokine (PSK) signaling.	The PSI family of nuclear proteins is required for growth in arabidopsis.2014 · DOI: 10.1007/s11103-014-0229-2
`At5g08660`	Promotes plant growth, especially at the vegetative stage, probably via the regulation of phytosulfokine (PSK) signaling; PSK are peptide phytohormones acting as growth factors.	The PSI family of nuclear proteins is required for growth in arabidopsis.2014 · DOI: 10.1007/s11103-014-0229-2
`At1g30755`	Promotes seedling growth probably via the regulation of phytosulfokine (PSK) signaling.	The PSI family of nuclear proteins is required for growth in arabidopsis.2014 · DOI: 10.1007/s11103-014-0229-2

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022329 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006109 regulation of carbohydrate metabolic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0043434 response to peptide hormone Biological Process

GO:0045927 positive regulation of growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003746 translation elongation factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G30755

ath:AT1G34320

ath:AT5G08660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.443

Rank 1 · TkA08G097720 · TK1151

Cell membrane0.395

Rank 2 · TkA08G097720 · TK1151

Nucleus0.273

Rank 3 · TkA08G097720 · TK1151

Golgi apparatus0.067

Rank 4 · TkA08G097720 · TK1151

Endoplasmic reticulum0.059

Rank 5 · TkA08G097720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11961DUF3475158-214 aa

PF05003DUF668249-269 aa

PF02026RyR264-317 aa

PF05003DUF668314-346 aa

PF05003DUF668376-460 aa

PF12429DUF3676490-576 aa

PF02026RyR545-574 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G097720	`PF11961`	DUF3475	158	214	5.3e-25	87.9
TkA08G097720	`PF05003`	DUF668	249	269	2.1e-31	108.9
TkA08G097720	`PF02026`	RyR	264	317	0.11	13.4
TkA08G097720	`PF05003`	DUF668	314	346	2.1e-31	108.9
TkA08G097720	`PF05003`	DUF668	376	460	2.1e-31	108.9
TkA08G097720	`PF12429`	DUF3676	490	576	0.025	15.1
TkA08G097720	`PF02026`	RyR	545	574	0.11	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XID5`	Arabidopsis thaliana	sp\|Q9XID5\|PSI1_ARATH Protein PSK SIMULATOR 1	65.700%	Swiss-Prot	High
`P0DO24`	Arabidopsis thaliana	sp\|P0DO24\|PSI3_ARATH Protein PSK SIMULATOR 3	51.600%	Swiss-Prot	High
`Q9SA91`	Arabidopsis thaliana	sp\|Q9SA91\|PSI2_ARATH Protein PSK SIMULATOR 2	50.700%	Swiss-Prot	High

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