TkA08G096930 | RubberDandelionOmics

Gene overview

TkA08G096930

Reference: TK1151 Chr: Chr08 Coordinates: 25077522-25078184 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

633 bp · TkA08G096930|TK1151|cDNA

ATGGAGTCGCCGGATTTCCCCAGCGGCAAGTCTCCCCGGTCACTCCAAGGTCCACGTCCGGCTCCCCTAAGAGTCCACAAAGATTCCCACAAGATCAGAAAACCGCCGGTAGCTCCACAGTCACACCAACAACAAGCTCAACACCAACTCAACCAGCAGCAGCAGCACCGGCCACCGGTTATCATTTACACCGTTTCCCCTAAGGTAATTCATACAAATCCAAATGAATTCATGACTTTAGTACAACGTTTGACCGGCCC...

CDS

Download CDS FASTA

633 bp · TkA08G096930|TK1151|CDS

ATGGAGTCGCCGGATTTCCCCAGCGGCAAGTCTCCCCGGTCACTCCAAGGTCCACGTCCGGCTCCCCTAAGAGTCCACAAAGATTCCCACAAGATCAGAAAACCGCCGGTAGCTCCACAGTCACACCAACAACAAGCTCAACACCAACTCAACCAGCAGCAGCAGCACCGGCCACCGGTTATCATTTACACCGTTTCCCCTAAGGTAATTCATACAAATCCAAATGAATTCATGACTTTAGTACAACGTTTGACCGGCCC...

Protein

Download Protein FASTA

210 aa · TkA08G096930|TK1151|PROTEIN

MESPDFPSGKSPRSLQGPRPAPLRVHKDSHKIRKPPVAPQSHQQQAQHQLNQQQQHRPPVIIYTVSPKVIHTNPNEFMTLVQRLTGPSAASPVGSSFSAFQDDGGAVSPAARFASIERAAKSPEGRKVLQSGDLGAVEGLEMGYFPGILSPAPGSLPPIPSNFFSPLTNDFFHDLSPGLRNNFMPSPTNLLSSHIISPTTPDLFHSLFDL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G096930`
TK1151 ID	TkA08G096930
OH-1004 ID	LXL04_031248
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G096930

Location Chr08:25077522-25078184 (-)

Description Similar to MKS1: Protein MKS1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18690`	Regulator of plant defense response.	The MAP kinase substrate MKS1 is a regulator of plant defense responses.2005 · DOI: 10.1038/sj.emboj.7600737
`At1g21320`	Alternative splicing (AS) regulator that binds to specific mRNAs and modulates auxin effects on the transcriptome.	No verified direct reference in this release
`At3g18360`	May function as negative regulator of plant defense.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002758 innate immune response-activating signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G21320

ath:AT1G68450

ath:AT3G18360

ath:AT3G18690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.841

Rank 1 · TkA08G096930 · TK1151

Cytoplasm0.302

Rank 2 · TkA08G096930 · TK1151

Cell membrane0.055

Rank 3 · TkA08G096930 · TK1151

Endoplasmic reticulum0.049

Rank 4 · TkA08G096930 · TK1151

Plastid0.015

Rank 5 · TkA08G096930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05678VQ64-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G096930	`PF05678`	VQ	64	91	1.5e-13	50.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LGD5`	Arabidopsis thaliana	sp\|Q8LGD5\|MKS1_ARATH Protein MKS1	45.100%	Swiss-Prot	Medium
`F4HWF9`	Arabidopsis thaliana	sp\|F4HWF9\|NSRB_ARATH Nuclear speckle RNA-binding protein B	43.500%	Swiss-Prot	Medium
`Q9LS54`	Arabidopsis thaliana	sp\|Q9LS54\|VQ20_ARATH VQ motif-containing protein 20	52.200%	Swiss-Prot	Low

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