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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G090260
Reference: TK1151 Chr: Chr08 Coordinates: 23388283-23391434 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1659 bp · TkA08G090260|TK1151|cDNA

CTATCCTCACAAGTCACAAATACAAATACAAATACGAATACACAGCTTTTACTTTTGTGACTTTGTTATTTCTTTCACTTCTTTGTTTCCCCTGCTTTTATTGTTTCGGTTTCTGCTTATCTTGCATTTCCTTCTCTGGATTTCTTGTAATTCTTTCTCTCTGTCTCTTTCGTGCAAGAACACGCCATGGTATCTCGTGGATCATCTAGTGTTTGATCCGTTATATATCTCTTTGAACTAAAGAAACAATACACATTCTG...

CDS

Download CDS FASTA

714 bp · TkA08G090260|TK1151|CDS

ATGGAAGCTGGGGTGAATTTTAGGAACTGGGCAGATCTGTTGCCCGACGCACTTGGTTTAATCTTTAGCCACCTCTCTCTTCAAGAAACTCTCACAGTCGTTCCAAGAGTCTGCAAATCATGGAACCAAGCAGTCCTGGGTCCTTACTGTTGGCAAAACATCAACATTCTTGACTGGAGCTATCGGTCAAACCCTGATCACATTGACCATATGCTCCGACTCCTTGTTACCAGAAGTGGTGGCGCCCTCCGCGAGATCAC...

Protein

Download Protein FASTA

237 aa · TkA08G090260|TK1151|PROTEIN

MEAGVNFRNWADLLPDALGLIFSHLSLQETLTVVPRVCKSWNQAVLGPYCWQNINILDWSYRSNPDHIDHMLRLLVTRSGGALREITVSGILNDLTFSFLADHGRSLQTLQIPRCNISDAIVEQISTKLLAVTFMDLSYCRKISARALSAIGKSCKSLVGFRRNMHPIDIQERRPQAEEAVAIAATMPRLKHLEMAYNCVDTNNVVEIIERCKELEFLDVRGCWDVKLDQDWLIRGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G090260
TK1151 IDTkA08G090260
OH-1004 IDLXL04_031161
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 98.312 / OH-1004 75.161
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G090260
LocationChr08:23388283-23391434 (-)
DescriptionSimilar to FBW2: F-box protein FBW2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g08980 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At4g05460 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At4g05497 Putative F-box/LRR-repeat protein 9. No verified direct reference in this release
At4g05475 Putative F-box protein At4g05475. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031161 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010608 post-transcriptional regulation of gene expression Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
GO:1905761 SCF ubiquitin ligase complex binding Molecular Function
KEGG gene cross-reference
ath:AT4G05460
ath:AT4G05497
ath:AT4G08980
ath:AT5G57900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.453
Rank 1 · TkA08G090260 · TK1151
Cytoplasm0.375
Rank 2 · TkA08G090260 · TK1151
Plastid0.102
Rank 3 · TkA08G090260 · TK1151
Cell membrane0.074
Rank 4 · TkA08G090260 · TK1151
Mitochondrion0.068
Rank 5 · TkA08G090260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box12-52 aa
PF12937F-box-like16-55 aa
PF23622LRR_At1g61320_AtMIF173-144 aa
PF25372LRR_FBXL1585-156 aa
PF29594LRR_SKP2101-220 aa
PF13516LRR_6105-124 aa
PF00560LRR_1106-125 aa
PF12799LRR_4106-119 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G090260PF00646F-box12527.4e-0626.4
TkA08G090260PF12937F-box-like16555.7e-0729.9
TkA08G090260PF23622LRR_At1g61320_AtMIF1731440.2411.4
TkA08G090260PF25372LRR_FBXL15851569.8e-0521.6
TkA08G090260PF29594LRR_SKP21012202.8e-0834.1
TkA08G090260PF13516LRR_61051240.003817.9
TkA08G090260PF00560LRR_11061250.03314.9
TkA08G090260PF12799LRR_41061190.09713.7
TkA08G090260PF25013LRR_Zer-11241450.1113.4
TkA08G090260PF00560LRR_11331420.03314.9
TkA08G090260PF00646F-box1341537.4e-0626.4
TkA08G090260PF13516LRR_61361510.003817.9
TkA08G090260PF24758LRR_At5g563701802230.01615.6
TkA08G090260PF25013LRR_Zer-11872200.1113.4
TkA08G090260PF23622LRR_At1g61320_AtMIF11872260.2411.4
TkA08G090260PF12799LRR_41882230.09713.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPE4Arabidopsis thalianasp|Q9ZPE4|FBW2_ARATH F-box protein FBW256.100%Swiss-ProtHigh
Q9M0U9Arabidopsis thalianasp|Q9M0U9|SKI19_ARATH F-box protein SKIP1929.500%Swiss-ProtLow
Q9S9V8Arabidopsis thalianasp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 928.600%Swiss-ProtLow
Q9M0U7Arabidopsis thalianasp|Q9M0U7|FB221_ARATH Putative F-box protein At4g0547528.900%Swiss-ProtLow

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