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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G089870
Reference: TK1151 Chr: Chr08 Coordinates: 23283290-23288592 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3091 bp · TkA08G089870|TK1151|cDNA

AAACTATTCGATAACACAAATTCTAGGGTTACGTGCGATTTATCTACTGATTATTTGAAGCTTTCGTCCGTCGAGTTTTAGTTAGCGATTTGCATAACTCCAATGACCGAAGCTGTTGATCACCATAAAACGTAGGCATTTCCGTGAAATCGTGTAGAGTGAATCCTAAAATGAGCAAGCTAGTAGGATTGTCAGGCTTAAAGAGCTTCGATCACTTCAAATCTTCGTTAGGATCGTCTGGTTCGGCAACTGCAAAAAGT...

CDS

Download CDS FASTA

2526 bp · TkA08G089870|TK1151|CDS

ATGAGCAAGCTAGTAGGATTGTCAGGCTTAAAGAGCTTCGATCACTTCAAATCTTCGTTAGGATCGTCTGGTTCGGCAACTGCAAAAAGTTTCCAGATCTCTTCACGACAACCTTCCTATTCGAATTCATCAGGAAGTTTTGCCAATTTAAAGCTCACTGCAGAGAAATTGGTCAAAGAGCAAGCATCCGCGAAAACAGATCTTGACTTGGCGAATTCTAAGCTGAAGAAATTATCAGAGCATATTCGTGCTTTGGAAGA...

Protein

Download Protein FASTA

841 aa · TkA08G089870|TK1151|PROTEIN

MSKLVGLSGLKSFDHFKSSLGSSGSATAKSFQISSRQPSYSNSSGSFANLKLTAEKLVKEQASAKTDLDLANSKLKKLSEHIRALEEKLQNAYNENAKLKVKHKEDEKLWKGLESKFFSTKTLCDQLTETLQLLSDQVQDAEKDKGFFANKLSETSSALDNLHGQMKSLSLKLESSEETIWNREKQLEELAVSKETVDKLLRDEHCKVLSLTDEKDNIIKNFKETVASNNTNIESLTSKLSELQLELTSKEGSLNNMKDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G089870
TK1151 IDTkA08G089870
OH-1004 IDLXL04_031149
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G089870
LocationChr08:23283290-23288592 (+)
DescriptionSimilar to ZYP1A: Synaptonemal complex protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g22260 Required for chromosome synapsis and normal fidelity of crossing over. No verified direct reference in this release
At1g22275 Required for chromosome synapsis and normal fidelity of crossing over. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0452500 Required for chromosome synapsis and regulates crossover frequency during meiosis.
The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice.2010 · DOI: 10.1105/tpc.109.070789
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031149 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0051301 cell division Biological Process
GO:0051878 lateral element assembly Biological Process
GO:0000795 synaptonemal complex Cellular Component
GO:0000802 transverse filament Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005694 chromosome Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT1G22260
ath:AT1G22275
dosa:Os04g0452500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.617
Rank 1 · TkA08G089870 · TK1151
Cytoplasm0.307
Rank 2 · TkA08G089870 · TK1151
Golgi apparatus0.041
Rank 3 · TkA08G089870 · TK1151
Cell membrane0.030
Rank 4 · TkA08G089870 · TK1151
Mitochondrion0.028
Rank 5 · TkA08G089870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19220Rod_CreS46-311 aa
PF24161CCDC39114-196 aa
PF21449RIF2_ASCE174-239 aa
PF24161CCDC39214-432 aa
PF19220Rod_CreS346-461 aa
PF10829DUF2554347-382 aa
PF24161CCDC39367-495 aa
PF19220Rod_CreS392-562 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G089870PF19220Rod_CreS463113.9e-0627.0
TkA08G089870PF24161CCDC391141960.002316.6
TkA08G089870PF21449RIF2_ASCE1742390.06514.2
TkA08G089870PF24161CCDC392144320.002316.6
TkA08G089870PF19220Rod_CreS3464613.9e-0627.0
TkA08G089870PF10829DUF25543473822.48.9
TkA08G089870PF24161CCDC393674950.002316.6
TkA08G089870PF19220Rod_CreS3925623.9e-0627.0
TkA08G089870PF10829DUF25544384492.48.9
TkA08G089870PF24161CCDC394536710.002316.6
TkA08G089870PF21449RIF2_ASCE5205460.06514.2
TkA08G089870PF19220Rod_CreS5477133.9e-0627.0
TkA08G089870PF24161CCDC396147090.002316.6
TkA08G089870PF10829DUF25546717012.48.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LME2Arabidopsis thalianasp|Q9LME2|SYCP1_ARATH Synaptonemal complex protein 140.600%Swiss-ProtMedium
P61430Arabidopsis thalianasp|P61430|SYCP2_ARATH Synaptonemal complex protein 240.700%Swiss-ProtMedium
Q7FAD5Oryza sativa subsp. japonicasp|Q7FAD5|ZEP1_ORYSJ Synaptonemal complex protein ZEP137.900%Swiss-ProtMedium

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