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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G086320
Reference: TK1151 Chr: Chr08 Coordinates: 22307077-22312759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3549 bp · TkA08G086320|TK1151|cDNA

ATGAATACTTTTTTCTCATCATCTCTCCCCACCTCCTCTTCCTCTAAGAGGAAACGGGATGAGAATTCTGTTGATAAACCCGTTTGTAGAAGGCCAAAATATGACTTGTTTGTGAATTATTTGTACGAAGATATTGGCAAAAGCTTCATAAGCCATGTCTATGGAGCACTAGATCGGAACGGTTTTACCATATCCGACCACACCAAAGTCCCTGTAGGCCAGGAAGTAAGTTCGGAGGTGTTGAAAGCTATTGAGGGGTC...

CDS

Download CDS FASTA

3549 bp · TkA08G086320|TK1151|CDS

ATGAATACTTTTTTCTCATCATCTCTCCCCACCTCCTCTTCCTCTAAGAGGAAACGGGATGAGAATTCTGTTGATAAACCCGTTTGTAGAAGGCCAAAATATGACTTGTTTGTGAATTATTTGTACGAAGATATTGGCAAAAGCTTCATAAGCCATGTCTATGGAGCACTAGATCGGAACGGTTTTACCATATCCGACCACACCAAAGTCCCTGTAGGCCAGGAAGTAAGTTCGGAGGTGTTGAAAGCTATTGAGGGGTC...

Protein

Download Protein FASTA

1182 aa · TkA08G086320|TK1151|PROTEIN

MNTFFSSSLPTSSSSKRKRDENSVDKPVCRRPKYDLFVNYLYEDIGKSFISHVYGALDRNGFTISDHTKVPVGQEVSSEVLKAIEGSEIYVIVFSIRYASSVRCLEELVDIMDCKDKFDDQKKVFPVFLNVNPSDVKKQEGPFKEAFEAHMNNSDPKRVQKWRKALNDAGQLSGQHYKNGDEEGFVREIVKQLQSMRKPPQLYTKEHHVGVESRADELISRLRLDLEDVSIVAVLGIGGIGKTTIARAVYDRISAEFDVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G086320
TK1151 IDTkA08G086320
OH-1004 IDLXL04_018851
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)43.700
Protein coverage (%)TK1151 97.208 / OH-1004 64.719
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G086320
LocationChr08:22307077-22312759 (-)
DescriptionSimilar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63880 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease).
Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease.2006 · DOI: 10.1111/j.1365-313x.2006.02688.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018851 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0042575 DNA polymerase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.478
Rank 1 · TkA08G086320 · TK1151
Nucleus0.403
Rank 2 · TkA08G086320 · TK1151
Cell membrane0.222
Rank 3 · TkA08G086320 · TK1151
Endoplasmic reticulum0.070
Rank 4 · TkA08G086320 · TK1151
Plastid0.035
Rank 5 · TkA08G086320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR33-201 aa
PF13676TIR_237-133 aa
PF13401AAA_22103-129 aa
PF19302DUF5915182-199 aa
PF00931NB-ARC214-392 aa
PF25201nSTAND6216-251 aa
PF13191AAA_16222-273 aa
PF20720nSTAND3226-255 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G086320PF01582TIR332018e-37127.5
TkA08G086320PF13676TIR_2371333.8e-0834.6
TkA08G086320PF13401AAA_221031290.1113.5
TkA08G086320PF19302DUF59151821990.009916.8
TkA08G086320PF00931NB-ARC2143921.2e-1455.0
TkA08G086320PF25201nSTAND62162510.311.8
TkA08G086320PF13191AAA_162222730.01816.2
TkA08G086320PF20720nSTAND32262550.04814.1
TkA08G086320PF13173AAA_142303300.06514.0
TkA08G086320PF13401AAA_222303260.1113.5
TkA08G086320PF13855LRR_82913103.1e-1762.8
TkA08G086320PF20720nSTAND33133580.04814.1
TkA08G086320PF13855LRR_84474703.1e-1762.8
TkA08G086320PF23282WHD_ROQ14585042e-1247.8
TkA08G086320PF23282WHD_ROQ15305462e-1247.8
TkA08G086320PF23247LRR_RPS25756072.9e-0937.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CAK1Arabidopsis thalianasp|Q9CAK1|RLM1B_ARATH Disease resistance protein RML1B27.400%Swiss-ProtLow

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