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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G085530
Reference: TK1151 Chr: Chr08 Coordinates: 22045552-22046487 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

936 bp · TkA08G085530|TK1151|cDNA

ATGGACTTGTCGGTGCTCCGGCGTCGTCAACAGAAGGAAAAAGTGGTGGTTGTAATGGGTGCTACCGGCACCGGAAAATCAAGACTTTCTATCGACCTCGCCACCCGGTTCCAGGGTGAGATAATAAATTCTGACAAGATACAAATCTATGAAGGATTAGATATCGTCACGAATAAAATCAGTGAGGAAGAATGCGGCGGCGTGCCGCACCACCTTCTCGGAATTGTCGACCCGGAATCGGATTTCACCGCAAGAAACTT...

CDS

Download CDS FASTA

936 bp · TkA08G085530|TK1151|CDS

ATGGACTTGTCGGTGCTCCGGCGTCGTCAACAGAAGGAAAAAGTGGTGGTTGTAATGGGTGCTACCGGCACCGGAAAATCAAGACTTTCTATCGACCTCGCCACCCGGTTCCAGGGTGAGATAATAAATTCTGACAAGATACAAATCTATGAAGGATTAGATATCGTCACGAATAAAATCAGTGAGGAAGAATGCGGCGGCGTGCCGCACCACCTTCTCGGAATTGTCGACCCGGAATCGGATTTCACCGCAAGAAACTT...

Protein

Download Protein FASTA

311 aa · TkA08G085530|TK1151|PROTEIN

MDLSVLRRRQQKEKVVVVMGATGTGKSRLSIDLATRFQGEIINSDKIQIYEGLDIVTNKISEEECGGVPHHLLGIVDPESDFTARNFVSTASMAMESIVGRGKLPVIAGGSNSFIEALVDDENYDFRSRYDVCFLWVDVTMVVLHQFVADRVDRMVAAGMVEEVRNMYNPKADNSKGIRRAIGVPEFDSYFRAEYSSFADEKTRAKLLESAINKTKINTCILAHRQLEKIHRLRNVKGWKIHRLDATKVFQRKGREADEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G085530
TK1151 IDTkA08G085530
OH-1004 IDLXL04_036992
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)77.900
Protein coverage (%)TK1151 97.428 / OH-1004 90.361
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G085530
LocationChr08:22045552-22046487 (+)
DescriptionSimilar to IPT3: Adenylate isopentenyltransferase 3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g63110 Involved in cytokinin biosynthesis. No verified direct reference in this release
At5g19040 Involved in cytokinin biosynthesis. No verified direct reference in this release
At3g23630 Involved in cytokinin biosynthesis. No verified direct reference in this release
At3g19160 Involved in cytokinin biosynthesis.
Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana.2001 · DOI: 10.1074/jbc.m102130200
The Arabidopsis AtIPT8/PGA22 gene encodes an isopentenyl transferase that is involved in de novo cytokinin biosynthesis.2003 · DOI: 10.1104/pp.011494
At1g68460 Involved in cytokinin biosynthesis.
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis.2006 · DOI: 10.1073/pnas.0603522103

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036992 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006400 tRNA modification Biological Process
GO:0009691 cytokinin biosynthetic process Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0034265 isopentenyl adenine biosynthetic process Biological Process
GO:0080117 secondary growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0031965 nuclear membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0009824 AMP dimethylallyltransferase activity Molecular Function
KEGG gene cross-reference
ag:AAS94327
ath:AT1G68460
ath:AT3G23630
ath:AT3G63110
ath:AT5G19040
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.459
Rank 1 · TkA08G085530 · TK1151
Cytoplasm0.233
Rank 2 · TkA08G085530 · TK1151
Nucleus0.227
Rank 3 · TkA08G085530 · TK1151
Mitochondrion0.134
Rank 4 · TkA08G085530 · TK1151
Peroxisome0.051
Rank 5 · TkA08G085530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04851ResIII6-40 aa
PF13191AAA_168-39 aa
PF13401AAA_2211-188 aa
PF20720nSTAND311-40 aa
PF02562PhoH11-36 aa
PF13481AAA_2512-35 aa
PF01745IPT14-167 aa
PF09848SLFN-g3_helicase14-38 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G085530PF04851ResIII6400.02915.0
TkA08G085530PF13191AAA_168390.04714.9
TkA08G085530PF13401AAA_22111880.001419.7
TkA08G085530PF20720nSTAND311400.01915.4
TkA08G085530PF02562PhoH11360.0913.0
TkA08G085530PF13481AAA_2512350.03314.5
TkA08G085530PF01745IPT141678.2e-0832.7
TkA08G085530PF09848SLFN-g3_helicase14380.1911.7
TkA08G085530PF13671AAA_3315470.05514.5
TkA08G085530PF13521AAA_2816390.07614.0
TkA08G085530PF00910RNA_helicase16500.1213.6
TkA08G085530PF01715IPPT481211.4e-38133.7
TkA08G085530PF31070DUF8801921500.01415.7
TkA08G085530PF01715IPPT1272281.4e-38133.7
TkA08G085530PF13521AAA_281952220.07614.0
TkA08G085530PF20720nSTAND32002250.01915.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93WC9Arabidopsis thalianasp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic57.600%Swiss-ProtHigh
Q94ID2Arabidopsis thalianasp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic60.700%Swiss-ProtHigh
Q94ID1Arabidopsis thalianasp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial54.000%Swiss-ProtHigh
Q9LJL4Arabidopsis thalianasp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic46.100%Swiss-ProtMedium
Q94ID3Arabidopsis thalianasp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic45.800%Swiss-ProtMedium

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