TkA08G082490 | RubberDandelionOmics

Gene overview

TkA08G082490

Reference: TK1151 Chr: Chr08 Coordinates: 21207158-21209920 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2622 bp · TkA08G082490|TK1151|cDNA

CTTATACCCTTGAGGGGCTGGAGGTCGAGTGATCGATCCCCGTGGTGAGCAACTCATGGGGAATTTTCCCTGGAACCCCCATAAAAAAGGGTGAGTGCTAACCCTTAGGGAATATCGAACCCGGGTCTCTGCTGGAAACGGCAGAGAGGCTACCGTTGGACATCATAGCCGGTTCCAAAAAAAAATTCTATATTGTTCGTATTTTATCATCGATCTGAGCCTGATGGGCCCTAAGGCGGATTCAGTGAACTACTCTCAAA...

CDS

Download CDS FASTA

1410 bp · TkA08G082490|TK1151|CDS

ATGTTCATCACCAACATCATGAACTTGAAGAATCTTATCTACCCTCTTCTAAATTCCAACACACATATTATGTTCTTAGCCCTACTCATATCATGTCTTATTCTGTTATGTTTTTTCATCACCAAAAAACCTTCATGCAAAGTTTACTTACTAGATTTCGCTTGCTTCAAGCCTCCAAATTCACAAAAGTGCACTAAAGAGATGGTTATAAAGAGAGCAATAGATACCGGATACTTCTCGGAAAAGACACTAGATTTCAT...

Protein

Download Protein FASTA

469 aa · TkA08G082490|TK1151|PROTEIN

MFITNIMNLKNLIYPLLNSNTHIMFLALLISCLILLCFFITKKPSCKVYLLDFACFKPPNSQKCTKEMVIKRAIDTGYFSEKTLDFMRKTLERCGIGDSTYLAEIFFGESQKYTPSMKDSRKEVEMAIFGSIDMLLAKTCVRSEDIGILIVNCCIYNTNPSLSSMIVNRYTLRDDVVSYNLVGMGCSAGLWAIGLAKQLLQVHQNTYALIVSTESITENCYIGQDPSKFIINCLFRVGGAAMLLSNRPSDHRNSKYRLLH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G082490`
TK1151 ID	TkA08G082490
OH-1004 ID	LXL04_018774
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.800
Protein coverage (%)	TK1151 98.294 / OH-1004 77.479 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G082490

Location Chr08:21207158-21209920 (+)

Description Similar to KCS11: 3-ketoacyl-CoA synthase 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26640`	Active on both saturated and mono-unsaturated acyl chains C16 to C20.	Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162
`At5g43760`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101
`At1g04220`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101 The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza-micropyle region of seeds.2009 · DOI: 10.1111/j.1365-313x.2008.03674.x Two Arabidopsis 3-ketoacyl CoA synthase genes, KCS20 and KCS2/DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress.2009 · DOI: 10.1111/j.1365-313x.2009.03973.x
`At1g19440`	3-ketoacyl-CoA synthase 4.	No verified direct reference in this release
`At4g34510`	Active on saturated acyl-CoAs up to C22.	Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018774 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016020 membrane Cellular Component

GO:0009922 fatty acid elongase activity Molecular Function

KEGG gene cross-reference

ath:AT1G04220

ath:AT2G26640

ath:AT5G43760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.695

Rank 1 · TkA08G082490 · TK1151

Cell membrane0.154

Rank 2 · TkA08G082490 · TK1151

Cytoplasm0.096

Rank 3 · TkA08G082490 · TK1151

Lysosome / Vacuole0.068

Rank 4 · TkA08G082490 · TK1151

Golgi apparatus0.055

Rank 5 · TkA08G082490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08392FAE1_CUT1_RppA42-330 aa

PF15385SARG82-121 aa

PF00195Chal_sti_synt_N165-244 aa

PF08545ACP_syn_III184-250 aa

PF08541ACP_syn_III_C346-429 aa

PF02797Chal_sti_synt_C353-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G082490	`PF08392`	FAE1_CUT1_RppA	42	330	2.5e-107	359.2
TkA08G082490	`PF15385`	SARG	82	121	0.55	10.0
TkA08G082490	`PF00195`	Chal_sti_synt_N	165	244	0.11	12.7
TkA08G082490	`PF08545`	ACP_syn_III	184	250	0.0036	17.9
TkA08G082490	`PF08541`	ACP_syn_III_C	346	429	1.5e-13	51.4
TkA08G082490	`PF02797`	Chal_sti_synt_C	353	430	5.1e-08	33.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48780`	Arabidopsis thaliana	sp\|O48780\|KCS11_ARATH 3-ketoacyl-CoA synthase 11	55.000%	Swiss-Prot	High
`Q9FG87`	Arabidopsis thaliana	sp\|Q9FG87\|KCS20_ARATH 3-ketoacyl-CoA synthase 20	51.500%	Swiss-Prot	High
`Q5XEP9`	Arabidopsis thaliana	sp\|Q5XEP9\|KCS2_ARATH 3-ketoacyl-CoA synthase 2	51.900%	Swiss-Prot	High
`Q9LN49`	Arabidopsis thaliana	sp\|Q9LN49\|KCS4_ARATH 3-ketoacyl-CoA synthase 4	51.100%	Swiss-Prot	High
`O65677`	Arabidopsis thaliana	sp\|O65677\|KCS17_ARATH 3-ketoacyl-CoA synthase 17	48.000%	Swiss-Prot	Medium

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