TkA08G081240 | RubberDandelionOmics

Gene overview

TkA08G081240

Reference: TK1151 Chr: Chr08 Coordinates: 20883666-20884226 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

561 bp · TkA08G081240|TK1151|cDNA

ATGGATCACAGATTCAAAAGCAAATGGGAAAGTAACTTCATTTTTGATGATCGAAAAGACCGTGATAGTACTTACCAAGGTTTAATATCATTGCCTCAAAGAAACTTTACGTGTAGCTTTTGCAACAAAGAGTACAAGTCAGCACAAGCTCTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAGGTTGCGACTCTCATCACCTCCTTCTTCTTCTCTTGATGATCGTCCAAACCCTAATTACGGATCACCACC...

CDS

Download CDS FASTA

561 bp · TkA08G081240|TK1151|CDS

ATGGATCACAGATTCAAAAGCAAATGGGAAAGTAACTTCATTTTTGATGATCGAAAAGACCGTGATAGTACTTACCAAGGTTTAATATCATTGCCTCAAAGAAACTTTACGTGTAGCTTTTGCAACAAAGAGTACAAGTCAGCACAAGCTCTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAGGTTGCGACTCTCATCACCTCCTTCTTCTTCTCTTGATGATCGTCCAAACCCTAATTACGGATCACCACC...

Protein

Download Protein FASTA

186 aa · TkA08G081240|TK1151|PROTEIN

MDHRFKSKWESNFIFDDRKDRDSTYQGLISLPQRNFTCSFCNKEYKSAQALGGHMNVHRRDRARLRLSSPPSSSLDDRPNPNYGSPPLTPVRYLPYNTYHSPIFPLAMNTNVENEAREFVFAHSARDFLGYMRKKVIMKDDEEKEGEVDEENGIRAWKEKEFLMMGLVKDGKIEVDLDLELRLGRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G081240`
TK1151 ID	TkA08G081240
OH-1004 ID	LXL04_018756
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.200
Protein coverage (%)	TK1151 96.774 / OH-1004 50.420 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G081240

Location Chr08:20883666-20884226 (-)

Description Similar to ZFP11: Zinc finger protein 11

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42410`	Probable transcription factor that may regulate cell division and growth.	No verified direct reference in this release
`At5g06070`	Probable transcriptional regulator essential for petal development.	No verified direct reference in this release
`At2g37740`	Probable transcription factor that may regulate cell division and growth.	Ectopic expression of an Arabidopsis single zinc finger gene in tobacco results in dwarf plants.2002 · DOI: 10.1093/pcp/pcf086
`At3g23130`	Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl.	Regulation of SUP expression identifies multiple regulators involved in arabidopsis floral meristem development.2000 · DOI: 10.1105/tpc.12.9.1607 The FLO10 Gene Product Regulates the Expression Domain of Homeotic Genes AP3 and PI in Arabidopsis Flowers.1991 · DOI: 10.1105/tpc.3.11.1221
`At3g09290`	Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018756 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008361 regulation of cell size Biological Process

GO:0009409 response to cold Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010093 specification of floral organ identity Biological Process

GO:0030154 cell differentiation Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048441 petal development Biological Process

GO:0090691 formation of plant organ boundary Biological Process

KEGG gene cross-reference

ath:AT2G42410

ath:AT3G23130

ath:AT5G06070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · TkA08G081240 · TK1151

Cytoplasm0.085

Rank 2 · TkA08G081240 · TK1151

Cell membrane0.023

Rank 3 · TkA08G081240 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA08G081240 · TK1151

Plastid0.010

Rank 5 · TkA08G081240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13912zf-C2H2_623-29 aa

PF23320Zn_SUZ1233-57 aa

PF12756zf-C2H2_234-58 aa

PF13912zf-C2H2_636-60 aa

PF13894zf-C2H2_436-58 aa

PF00096zf-C2H236-58 aa

PF12171zf-C2H2_jaz36-56 aa

PF12874zf-met36-57 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G081240	`PF13912`	zf-C2H2_6	23	29	6.2e-07	30.0
TkA08G081240	`PF23320`	Zn_SUZ12	33	57	0.16	12.4
TkA08G081240	`PF12756`	zf-C2H2_2	34	58	0.083	13.9
TkA08G081240	`PF13912`	zf-C2H2_6	36	60	6.2e-07	30.0
TkA08G081240	`PF13894`	zf-C2H2_4	36	58	0.00034	21.8
TkA08G081240	`PF00096`	zf-C2H2	36	58	0.0044	18.1
TkA08G081240	`PF12171`	zf-C2H2_jaz	36	56	0.01	16.7
TkA08G081240	`PF12874`	zf-met	36	57	0.091	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SLB8`	Arabidopsis thaliana	sp\|Q9SLB8\|ZFP11_ARATH Zinc finger protein 11	58.100%	Swiss-Prot	Low
`Q9LHS9`	Arabidopsis thaliana	sp\|Q9LHS9\|RBE_ARATH Probable transcriptional regulator RABBIT EARS	64.000%	Swiss-Prot	Low
`O80942`	Arabidopsis thaliana	sp\|O80942\|ZFP10_ARATH Zinc finger protein 10	61.100%	Swiss-Prot	Low
`Q38895`	Arabidopsis thaliana	sp\|Q38895\|SUP_ARATH Transcriptional regulator SUPERMAN	61.700%	Swiss-Prot	Low
`Q9SR34`	Arabidopsis thaliana	sp\|Q9SR34\|TA1_ARATH Transcriptional regulator TAC1	58.700%	Swiss-Prot	Low

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