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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G080230
Reference: TK1151 Chr: Chr08 Coordinates: 20596604-20598743 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1296 bp · TkA08G080230|TK1151|cDNA

CGTGAAGCTATAAATACTCGCAGCTCCCGAAATCCAGAATTCGATTGAGGCGAAAATGGAGCTCGAATCAAGCAGTATCAAAGTAAACGGCATGCAATTCGGATACAGTGGCGATAATCCAATCTTTGTGGATTTTAACCTCAAGATCTCCCCTCGATCTCGTTGTCTTCTAGTCGGTGCCAATGGATCTGGAAAAACTACTTTGCTGAAGATTTTGGCTGGAAAACACATGGTCGGTGGGAAAAATGTTGTACGGGTGC...

CDS

Download CDS FASTA

828 bp · TkA08G080230|TK1151|CDS

ATGGAGCTCGAATCAAGCAGTATCAAAGTAAACGGCATGCAATTCGGATACAGTGGCGATAATCCAATCTTTGTGGATTTTAACCTCAAGATCTCCCCTCGATCTCGTTGTCTTCTAGTCGGTGCCAATGGATCTGGAAAAACTACTTTGCTGAAGATTTTGGCTGGAAAACACATGGTCGGTGGGAAAAATGTTGTACGGGTGCTAGATTTTTCATCTTTTCACGACACGCACTTAGTTTGTAGTGGCGATTTGTCTTA...

Protein

Download Protein FASTA

275 aa · TkA08G080230|TK1151|PROTEIN

MELESSSIKVNGMQFGYSGDNPIFVDFNLKISPRSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVRVLDFSSFHDTHLVCSGDLSYLGGSWTKTIGSAGDVPLQGDFSAEHMIFGVEGIDPTRREKLIDLLDIDLQWRMHKVSDGQRRRVQICLGLLHPFQVLLLDEVTVDLDVVARMDLLEFFKEECEQRGCTIVYATHIFDGLESWATDLAYIQDGDLKKYEKLSNIPEMKISSNLLSVVESWLRSETKNPKKKPVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G080230
TK1151 IDTkA08G080230
OH-1004 IDLXL04_018738
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G080230
LocationChr08:20596604-20598743 (-)
DescriptionSimilar to ABCI19: ABC transporter I family member 19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03905 ABC transporter I family member 19. No verified direct reference in this release
At5g44110 ABC transporter I family member 21. No verified direct reference in this release
At5g02270 ABC transporter I family member 20. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018738 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0010114 response to red light Biological Process
GO:0010218 response to far red light Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0030014 CCR4-NOT complex Cellular Component
GO:0030015 CCR4-NOT core complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT1G03905
ath:AT5G02270
ath:AT5G44110
sce:YFL028C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.566
Rank 1 · TkA08G080230 · TK1151
Nucleus0.429
Rank 2 · TkA08G080230 · TK1151
Mitochondrion0.129
Rank 3 · TkA08G080230 · TK1151
Plastid0.045
Rank 4 · TkA08G080230 · TK1151
Peroxisome0.044
Rank 5 · TkA08G080230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01580FtsK_SpoIIIE20-53 aa
PF00005ABC_tran26-170 aa
PF13175AAA_1527-54 aa
PF13555AAA_2928-51 aa
PF12775AAA_729-75 aa
PF24389ORC-CDC6-like30-55 aa
PF25201nSTAND630-68 aa
PF13604AAA_3032-66 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G080230PF01580FtsK_SpoIIIE20530.1512.2
TkA08G080230PF00005ABC_tran261705.8e-1453.6
TkA08G080230PF13175AAA_1527540.007816.5
TkA08G080230PF13555AAA_2928510.0004520.7
TkA08G080230PF12775AAA_729750.06613.5
TkA08G080230PF24389ORC-CDC6-like30550.0009518.7
TkA08G080230PF25201nSTAND630680.3111.8
TkA08G080230PF13604AAA_3032660.0314.8
TkA08G080230PF00437T2SSE32590.2310.8
TkA08G080230PF13481AAA_2533550.1912.0
TkA08G080230PF20720nSTAND334750.0005320.4
TkA08G080230PF00025Arf34590.0913.0
TkA08G080230PF13521AAA_2836570.01316.4
TkA08G080230PF05729NACHT36590.01715.7
TkA08G080230PF13479AAA_24361700.03614.5
TkA08G080230PF10662PduV-EutP36600.0514.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3EDJ0Arabidopsis thalianasp|Q3EDJ0|AB19I_ARATH ABC transporter I family member 1978.100%Swiss-ProtHigh
Q9XF19Arabidopsis thalianasp|Q9XF19|AB21I_ARATH ABC transporter I family member 2180.500%Swiss-ProtHigh
Q9LZ98Arabidopsis thalianasp|Q9LZ98|AB20I_ARATH ABC transporter I family member 2055.700%Swiss-ProtHigh

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