TkA08G079820 | RubberDandelionOmics

Gene overview

TkA08G079820

Reference: TK1151 Chr: Chr08 Coordinates: 20489558-20491180 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1405 bp · TkA08G079820|TK1151|cDNA

TTTCCATAAACCCTCACCAATCACTATAACACATCCATCTCCATCACCATCTTCGCAGAAAATTACCAGAGAATCAGAGATCGTTTTGAACTTTGAATGCACACACACATACCCCTCAAATGGCTTCACCGGAAAGTCATCTCCTCCTCCACCTCCTCCTCCTCCTCCTCTCCCTTCTCCTCCTCCGCCGCCGCCGCGGTTCTCACAAGCTTAATCTACAAAGGCTGTGCAAACCAGAATTTCCAAGACCCCGTCGCATC...

CDS

Download CDS FASTA

609 bp · TkA08G079820|TK1151|CDS

ATGCACACACACATACCCCTCAAATGGCTTCACCGGAAAGTCATCTCCTCCTCCACCTCCTCCTCCTCCTCCTCTCCCTTCTCCTCCTCCGCCGCCGCCGCGGTTCTCACAAGCTTAATCTACAAAGGCTGTGCAAACCAGAATTTCCAAGACCCCGTCGCATCTGAAAACCTCAAATCCCTTTTCACAGCCCTAGTTTCCCAATCCTCCACCAACCATTTCTACAAAGCAACCTCCGGTGGAAGTTCCCAAGCAACGAC...

Protein

Download Protein FASTA

202 aa · TkA08G079820|TK1151|PROTEIN

MHTHIPLKWLHRKVISSSTSSSSSSPFSSSAAAAVLTSLIYKGCANQNFQDPVASENLKSLFTALVSQSSTNHFYKATSGGSSQATTSITGLYQCRGDLSNTDCNTCVKKLPKHDPKSLRERHHCSSSPAAGCYMRYEVVGFQQVPATELLYKQCGSGRASGSGFSERLESALSMIPKGVSNGKGYYARWVPVCLRIGTVRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G079820`
TK1151 ID	TkA08G079820
OH-1004 ID	LXL04_018718
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	88.300
Protein coverage (%)	TK1151 76.238 / OH-1004 49.355 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G079820

Location Chr08:20489558-20491180 (-)

Description Similar to PDLP2: Plasmodesmata-located protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04520`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At2g33330`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g43980`	Modulates cell-to-cell trafficking.	The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition.2014 · DOI: 10.1371/journal.ppat.1004496
`At2g01660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g48540`	Cysteine-rich repeat secretory protein 55.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018718 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009615 response to virus Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0046739 transport of virus in multicellular host Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0001872 (1->3)-beta-D-glucan binding Molecular Function

KEGG gene cross-reference

ath:AT1G04520

ath:AT2G33330

ath:AT3G04370

ath:AT5G37660

ath:AT5G43980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.585

Rank 1 · TkA08G079820 · TK1151

Cell membrane0.180

Rank 2 · TkA08G079820 · TK1151

Endoplasmic reticulum0.146

Rank 3 · TkA08G079820 · TK1151

Cytoplasm0.083

Rank 4 · TkA08G079820 · TK1151

Nucleus0.045

Rank 5 · TkA08G079820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17979zf-CRD43-43 aa

PF01657Stress-antifung51-138 aa

PF17979zf-CRD86-136 aa

PF02146SIR289-143 aa

PF01657Stress-antifung160-187 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G079820	`PF17979`	zf-CRD	43	43	0.033	15.2
TkA08G079820	`PF01657`	Stress-antifung	51	138	5e-14	53.5
TkA08G079820	`PF17979`	zf-CRD	86	136	0.033	15.2
TkA08G079820	`PF02146`	SIR2	89	143	0.1	13.2
TkA08G079820	`PF01657`	Stress-antifung	160	187	5e-14	53.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NM73`	Arabidopsis thaliana	sp\|Q6NM73\|PDLP2_ARATH Plasmodesmata-located protein 2	48.700%	Swiss-Prot	Medium
`O22784`	Arabidopsis thaliana	sp\|O22784\|PDLP3_ARATH Plasmodesmata-located protein 3	42.200%	Swiss-Prot	Medium
`Q8GXV7`	Arabidopsis thaliana	sp\|Q8GXV7\|PDLP1_ARATH Plasmodesmata-located protein 1	41.800%	Swiss-Prot	Medium
`Q9ZU94`	Arabidopsis thaliana	sp\|Q9ZU94\|PDLP6_ARATH Plasmodesmata-located protein 6	29.600%	Swiss-Prot	Low
`Q9LV60`	Arabidopsis thaliana	sp\|Q9LV60\|CRR55_ARATH Cysteine-rich repeat secretory protein 55	34.400%	Swiss-Prot	Low

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