RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G075670
Reference: TK1151 Chr: Chr08 Coordinates: 19439241-19440377 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1137 bp · TkA08G075670|TK1151|cDNA

ATGGCGAGACCAATCTTACAGCGACGCTCTCTCGCCTCCACTCTAACCGCATTTCTCAATCGCCGATCAATCTCCACCGTCGCCGTTGATGCACCCAGAAACCCCATTACCTCGATACCTCTGCCATCCCCACCACCACCACAAATCTCCAACCTGAGAACGAGAACTCCACTAGAGAAGCAATTCGAGACATGGCTCGAAAAGCTCAAACCCGGATTCACCCCATACGACGTGGACGAAGCATTACGTGCTCAATCCGA...

CDS

Download CDS FASTA

1137 bp · TkA08G075670|TK1151|CDS

ATGGCGAGACCAATCTTACAGCGACGCTCTCTCGCCTCCACTCTAACCGCATTTCTCAATCGCCGATCAATCTCCACCGTCGCCGTTGATGCACCCAGAAACCCCATTACCTCGATACCTCTGCCATCCCCACCACCACCACAAATCTCCAACCTGAGAACGAGAACTCCACTAGAGAAGCAATTCGAGACATGGCTCGAAAAGCTCAAACCCGGATTCACCCCATACGACGTGGACGAAGCATTACGTGCTCAATCCGA...

Protein

Download Protein FASTA

378 aa · TkA08G075670|TK1151|PROTEIN

MARPILQRRSLASTLTAFLNRRSISTVAVDAPRNPITSIPLPSPPPPQISNLRTRTPLEKQFETWLEKLKPGFTPYDVDEALRAQSDADLAFDIFRWTGQQRGYKHNSTTYLTMVQIAVSGKRYYHAETLVEEIVAGACSGSVPLYNSVIKFCCGRKFLFNRAFDVYKKMLNDEDTKPNLETYKLLLDSLLRRFNNLNVSHVYLRGVKSLSKQMKASGVIPDTFAHNMIIKAHAKCHELEQAIRVFREMALYGNQPNLYT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G075670
TK1151 IDTkA08G075670
OH-1004 IDLXL04_018648
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 71.693 / OH-1004 71.693
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G075670
LocationChr08:19439241-19440377 (-)
DescriptionSimilar to At3g25210: Pentatricopeptide repeat-containing protein At3g25210, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25210 Pentatricopeptide repeat-containing protein At3g25210, mitochondrial. No verified direct reference in this release
At2g27800 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018648 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03560
ath:AT2G27800
ath:AT3G25210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.807
Rank 1 · TkA08G075670 · TK1151
Plastid0.108
Rank 2 · TkA08G075670 · TK1151
Nucleus0.062
Rank 3 · TkA08G075670 · TK1151
Cytoplasm0.030
Rank 4 · TkA08G075670 · TK1151
Cell membrane0.010
Rank 5 · TkA08G075670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long86-135 aa
PF23276TPR_2486-116 aa
PF13041PPR_287-115 aa
PF13812PPR_3100-156 aa
PF12854PPR_1102-115 aa
PF29070MSC6_N103-132 aa
PF01535PPR110-134 aa
PF13041PPR_2145-191 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G075670PF17177PPR_long861351.6e-1764.3
TkA08G075670PF23276TPR_24861161.9e-0938.3
TkA08G075670PF13041PPR_2871153.4e-39133.4
TkA08G075670PF13812PPR_31001564.7e-1659.3
TkA08G075670PF12854PPR_11021152.6e-2691.7
TkA08G075670PF29070MSC6_N1031322.6e-0627.5
TkA08G075670PF01535PPR1101341.1e-1969.9
TkA08G075670PF13041PPR_21451913.4e-39133.4
TkA08G075670PF12854PPR_11461702.6e-2691.7
TkA08G075670PF01535PPR1531721.1e-1969.9
TkA08G075670PF17177PPR_long1542971.6e-1764.3
TkA08G075670PF23276TPR_241592491.9e-0938.3
TkA08G075670PF29070MSC6_N1602462.6e-0627.5
TkA08G075670PF13812PPR_31631884.7e-1659.3
TkA08G075670PF08579RPM21641939.4e-0523.5
TkA08G075670PF21005OB_MCEL_GT1642570.212.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSF5Arabidopsis thalianasp|Q9LSF5|PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210, mitochondrial70.300%Swiss-ProtMedium
Q9ZUY1Arabidopsis thalianasp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800, mitochondrial33.200%Swiss-ProtMedium

JBrowse

View in Genome Browser