TkA08G072870 | RubberDandelionOmics

Gene overview

TkA08G072870

Reference: TK1151 Chr: Chr08 Coordinates: 18825384-18828046 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1668 bp · TkA08G072870|TK1151|cDNA

ATGATGTGCGTATATTGTTGTGGATACATCGCTATTTCAACATGTTATGAAACAAACCCTTCTAAGCATTGCCTTGTAGAGGATAAACCAAACCGTTGCATATCTAAGGTGATTGGGGAAGTAGTTAGTCAGGAACAGTCCGCTTTTATTCAAGGGCGGCAAATTCTAGACGGAGTGCTCATCTTTAATGAAGTGGTGAGATGGGCTAAAGTCAAAAAGAAGAAAATGATGCTTTTTAAGGTGGATTTTGAGAAGGTTTA...

CDS

Download CDS FASTA

1668 bp · TkA08G072870|TK1151|CDS

ATGATGTGCGTATATTGTTGTGGATACATCGCTATTTCAACATGTTATGAAACAAACCCTTCTAAGCATTGCCTTGTAGAGGATAAACCAAACCGTTGCATATCTAAGGTGATTGGGGAAGTAGTTAGTCAGGAACAGTCCGCTTTTATTCAAGGGCGGCAAATTCTAGACGGAGTGCTCATCTTTAATGAAGTGGTGAGATGGGCTAAAGTCAAAAAGAAGAAAATGATGCTTTTTAAGGTGGATTTTGAGAAGGTTTA...

Protein

Download Protein FASTA

555 aa · TkA08G072870|TK1151|PROTEIN

MMCVYCCGYIAISTCYETNPSKHCLVEDKPNRCISKVIGEVVSQEQSAFIQGRQILDGVLIFNEVVRWAKVKKKKMMLFKVDFEKVYDTISWGMMKFMGFRSRWRGSMQGCLRTATSSVLLNGCPTDEFQLASGHRQGDPLSPFLFILVMEGLHVCMEDAVSQRLYRGVEVREPVVGLSHLFYADDAIFECSQLAMVTGCAADGFPFRYLGLPVGDKMNRLSAWDPLMNRIKSCYGTHAGFHDQRRQSNCGVWGGISKLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G072870`
TK1151 ID	TkA08G072870
OH-1004 ID	LXL04_019955
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	40.000
Protein coverage (%)	TK1151 88.108 / OH-1004 32.525 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G072870

Location Chr08:18825384-18828046 (-)

Description Similar to LINE-1 retrotransposable element ORF2 protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P92555`	Uncharacterized mitochondrial protein AtMg01250.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019955 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0032197 retrotransposition Biological Process

GO:0090304 nucleic acid metabolic process Biological Process

GO:0003723 RNA binding Molecular Function

GO:0003824 catalytic activity Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.593

Rank 1 · TkA08G072870 · TK1151

Nucleus0.242

Rank 2 · TkA08G072870 · TK1151

Cell membrane0.157

Rank 3 · TkA08G072870 · TK1151

Golgi apparatus0.089

Rank 4 · TkA08G072870 · TK1151

Endoplasmic reticulum0.067

Rank 5 · TkA08G072870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_134-192 aa

PF27420TP_067942-101 aa

PF13966zf-RVT282-344 aa

PF13966zf-RVT371-455 aa

PF27420TP_0679488-507 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G072870	`PF00078`	RVT_1	34	192	8.9e-11	42.8
TkA08G072870	`PF27420`	TP_0679	42	101	0.13	13.7
TkA08G072870	`PF13966`	zf-RVT	282	344	7.4e-17	62.5
TkA08G072870	`PF13966`	zf-RVT	371	455	7.4e-17	62.5
TkA08G072870	`PF27420`	TP_0679	488	507	0.13	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92555`	Arabidopsis thaliana	sp\|P92555\|M1250_ARATH Uncharacterized mitochondrial protein AtMg01250	34.300%	Swiss-Prot	Low

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