TkA08G069690 | RubberDandelionOmics

Gene overview

TkA08G069690

Reference: TK1151 Chr: Chr08 Coordinates: 17952485-17958607 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3237 bp · TkA08G069690|TK1151|cDNA

CTATAATAAGCTAAACTAATAAATGTAAATCATAATTAGCCATTTTAATGTTTATAATTCGAGTTTAACTTTTTGCACCCTCCGAATAGTTTATCCTTTCTTCGTTAACGCATGAGGCACCCTTGAGTACAGACTTATTTTAAGTGTATCTCAAAATATTGTTTTTAAATTGATCTTCGATTTTATAGCGTAAATTGTTCTCTTCTTGATCGTCGTTTTCCTGACTGTAACCCAGAGCTTCATTCCCCCTTTGGTATGGC...

CDS

Download CDS FASTA

2208 bp · TkA08G069690|TK1151|CDS

ATGGAAAAGAATGAAGAGTCAGGTAGCCCAGGTTGGGGTGCTTCATTCTTCACGCAGACTACCGAAGATGTCACCAGAGCTCTTCTTGCTGCCGCCGCCGCCGCCAGCGCTCCTCCTTCTTCACGACCATCAGTTCTATACTCATCAAAAGACGACACTGGCGGCCATCTCCAAAAGCTTCAAAATCAAGTCTTTAAAGTACTCAAAGGCTTATCGCATTCTACAGAAGAGAAAAAAACCTACAACCCAGAAGTATTAAC...

Protein

Download Protein FASTA

735 aa · TkA08G069690|TK1151|PROTEIN

MEKNEESGSPGWGASFFTQTTEDVTRALLAAAAAASAPPSSRPSVLYSSKDDTGGHLQKLQNQVFKVLKGLSHSTEEKKTYNPEVLTSQKRQWASFQLQTLHRRILKEPSNLFESFVVVGLNPDCDIQSLEKQYFARNSQVNGQHQSMSTVDNLEPQVLFVYPPDKQLPLKSTDLISFCFPGGLEVNAVERTPSMSELNEILLGQEHLKQSDLSFVFRLQGADDSILYGCCLVADELVQKPSRLLSSLSDRRPIQPVTSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G069690`
TK1151 ID	TkA08G069690
OH-1004 ID	LXL04_018588
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 95.828 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G069690`
Location	Chr08:17952485-17958607 (+)
Description	Similar to DENND4A: C-myc promoter-binding protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018588` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0032483 regulation of Rab protein signal transduction Biological Process GO:0070374 positive regulation of ERK1 and ERK2 cascade Biological Process GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0005938 cell cortex Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:0043657 host cell Cellular Component GO:0055037 recycling endosome Cellular Component
KEGG gene cross-reference	fgr:FGSG_06284 hsa:10260 mmu:76954 vda:VDAG_01962 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550

Rank 1 · TkA08G069690 · TK1151

Nucleus0.253

Rank 2 · TkA08G069690 · TK1151

Cell membrane0.222

Rank 3 · TkA08G069690 · TK1151

Golgi apparatus0.127

Rank 4 · TkA08G069690 · TK1151

Lysosome / Vacuole0.092

Rank 5 · TkA08G069690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02141DENN152-175 aa

PF03456uDENN156-233 aa

PF02141DENN265-300 aa

PF02141DENN506-608 aa

PF03455dDENN697-722 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G069690	`PF02141`	DENN	152	175	7.3e-27	95.1
TkA08G069690	`PF03456`	uDENN	156	233	1.6e-07	32.4
TkA08G069690	`PF02141`	DENN	265	300	7.3e-27	95.1
TkA08G069690	`PF02141`	DENN	506	608	7.3e-27	95.1
TkA08G069690	`PF03455`	dDENN	697	722	1.8e-05	25.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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