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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G069500
Reference: TK1151 Chr: Chr08 Coordinates: 17898383-17901050 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1403 bp · TkA08G069500|TK1151|cDNA

CACAAAATTATTAATTGAATAAACAATAATAAAACGTACAAAAATAAAAACGAAAAGAAAAGGAAGAAGCAGATTTGTTGACAGGGAGTGTAATTAAACGGGGAGAACGTAAATATATTTTCCCAAACTTATATCAGATCCTAACAAGAAGAAGAAGGAACTGAAATCAAATCATTCAGTGAATTTGATCATTTTCACCCGACGAAAATCCATGTAATCTGTCTCTTAACGATCATCACTGCAAACTGGCACACCATAAT...

CDS

Download CDS FASTA

1056 bp · TkA08G069500|TK1151|CDS

ATGTCTATGGACCGACACGCTGCTTCCAACCTTGCATCTCATGAAGATAATTATCTATTCCTTGATGTATCGAATGAAGCTCCTTCATATGGCAATCGGAAATGTACAAGCATTTTTGGCAGCATATTGTACTGTATACTTTTGGCAAGTTATGCTATACTGGCGATTGGAGCTCCATGGGTGTTCGAATCTGAGAAATACTTGACATTACAGATACTCTGCACCTGTGACGTCACTTTATTAATCATTACTGGCATCTT...

Protein

Download Protein FASTA

351 aa · TkA08G069500|TK1151|PROTEIN

MSMDRHAASNLASHEDNYLFLDVSNEAPSYGNRKCTSIFGSILYCILLASYAILAIGAPWVFESEKYLTLQILCTCDVTLLIITGIFQHYMVYQVQKIRLQGYYIFSQKLKHVVRMPFASISYGTCGMLLFMVWEPYINILSIPLVLRIIMLVEAIVAGSSLGVYIGHLHRYNTLEAQPDVVKSLHSPLQPSNSQEGLRYQDGGYLSDQQMALLQYQRENLNFLSEEILRLQDSLSKYEKSGDTPQVDLAHLLASRDQEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G069500
TK1151 IDTkA08G069500
OH-1004 IDLXL04_018585
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G069500
LocationChr08:17898383-17901050 (+)
DescriptionSimilar to FIP1: Protein FIP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g06005 Protein FIP1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018585 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005770 late endosome Cellular Component
KEGG gene cross-reference
ath:AT2G06005
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.360
Rank 1 · TkA08G069500 · TK1151
Golgi apparatus0.310
Rank 2 · TkA08G069500 · TK1151
Cytoplasm0.268
Rank 3 · TkA08G069500 · TK1151
Cell membrane0.157
Rank 4 · TkA08G069500 · TK1151
Nucleus0.150
Rank 5 · TkA08G069500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14802TMEM19241-231 aa
PF27867Membra_charge138-170 aa
PF26666DUF8221171-196 aa
PF25443ANG-1174-214 aa
PF16515HIP1_clath_bdg205-257 aa
PF15619Lebercilin206-299 aa
PF16454PI3K_P85_iSH2217-274 aa
PF26666DUF8221219-306 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G069500PF14802TMEM192412312.5e-1247.1
TkA08G069500PF27867Membra_charge1381700.08613.6
TkA08G069500PF26666DUF82211711960.910.4
TkA08G069500PF25443ANG-11742148.57.3
TkA08G069500PF16515HIP1_clath_bdg2052573.88.7
TkA08G069500PF15619Lebercilin2062990.3411.2
TkA08G069500PF16454PI3K_P85_iSH22172744.27.6
TkA08G069500PF26666DUF82212193060.910.4
TkA08G069500PF28256CCDC1712203330.09910.8
TkA08G069500PF25443ANG-12243058.57.3
TkA08G069500PF09304Cortex-I_coil2302793.78.5
TkA08G069500PF25762HAUS12323400.1712.3
TkA08G069500PF19220Rod_CreS2533230.04813.5
TkA08G069500PF23649FKBP152553410.03614.4
TkA08G069500PF24161CCDC392553380.269.8
TkA08G069500PF16515HIP1_clath_bdg2593383.88.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8S8K9Arabidopsis thalianasp|Q8S8K9|FRIP1_ARATH Protein FIP164.500%Swiss-ProtHigh

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