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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G066550
Reference: TK1151 Chr: Chr08 Coordinates: 17126180-17128255 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1784 bp · TkA08G066550|TK1151|cDNA

AATATACTAATATAATATAATATTTAAACACATATTATATGCACTAAAATACAATTAAGGGGAAGTATATGGGCCATTTATAAATGTTTTTTGGGCGCGACCCAAAGAAACGCTTGCCAATCCTCCTATCCATAACTCCACCACCATCGTCTTCCCTCTTCGTTTCTTCCAATGGCCGCTGCTGCAACTACCACCGCCACCGCCACCGCCACCTTCCAGAGGACACCCACCCTACATCTAACTCAAACTCCAGTTCGAGT...

CDS

Download CDS FASTA

924 bp · TkA08G066550|TK1151|CDS

ATGGCCGCTGCTGCAACTACCACCGCCACCGCCACCGCCACCTTCCAGAGGACACCCACCCTACATCTAACTCAAACTCCAGTTCGAGTTAGCTCCTACTCAAACTTCTCTTGTGCATCTCTTCAACGCAGCAGGCGGTCATGGCCAACACAACTTCCCCTTATATCGTCCTCCTCTTCCTCAATTTCTGTCTCTTCTAGGTTATCTCGTCTTCCAGTTGGATTCTTCTTCTGCTCCGCTTCTTCACACGACGAAACCGT...

Protein

Download Protein FASTA

307 aa · TkA08G066550|TK1151|PROTEIN

MAAAATTTATATATFQRTPTLHLTQTPVRVSSYSNFSCASLQRSRRSWPTQLPLISSSSSSISVSSRLSRLPVGFFFCSASSHDETVVTEDEKDVATEESQPQAEDTEETTTEVESSESDGSEVEESPASILASLQSYKEALADNNESKIAEIESHFKSIEDEKLSMETQLAALSEEVSTARDRVLRISADFDNFRKRTERERISLVANAQGEVVESLLAVLDNFERAKSAIKVETEKEEKINNSYQSIYKQFVEVLTSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G066550
TK1151 IDTkA08G066550
OH-1004 IDLXL04_018529
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.600
Protein coverage (%)TK1151 90.879 / OH-1004 79.261
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G066550
LocationChr08:17126180-17128255 (+)
DescriptionSimilar to grpE: Protein GrpE (Thermosynechococcus elongatus (strain BP-1)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018529 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0000774 adenyl-nucleotide exchange factor activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0051082 unfolded protein binding Molecular Function
GO:0051087 protein-folding chaperone binding Molecular Function
KEGG gene cross-reference
pmj:P9211_00161
pmm:PMM0016
syd:Syncc9605_0023
syx:SynWH7803_0022
tel:tlr1314
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.981
Rank 1 · TkA08G066550 · TK1151
Mitochondrion0.028
Rank 2 · TkA08G066550 · TK1151
Cytoplasm0.024
Rank 3 · TkA08G066550 · TK1151
Nucleus0.022
Rank 4 · TkA08G066550 · TK1151
Peroxisome0.015
Rank 5 · TkA08G066550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01025GrpE97-150 aa
PF24627PUMA_CC107-119 aa
PF29057SYN8_N113-159 aa
PF21121Nup49_C114-114 aa
PF29308YEL043W_helical125-200 aa
PF10303DUF2408130-260 aa
PF27583BEGAIN_coil135-192 aa
PF24319DUF7491136-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G066550PF01025GrpE971503.4e-2382.8
TkA08G066550PF24627PUMA_CC1071195.47.8
TkA08G066550PF29057SYN8_N1131590.6511.2
TkA08G066550PF21121Nup49_C1141140.01117.0
TkA08G066550PF29308YEL043W_helical1252000.0116.7
TkA08G066550PF10303DUF24081302600.03115.6
TkA08G066550PF27583BEGAIN_coil1351928.97.6
TkA08G066550PF24319DUF74911361991.99.5
TkA08G066550PF01544CorA1402512.38.1
TkA08G066550PF21121Nup49_C1451890.01117.0
TkA08G066550PF24627PUMA_CC1451835.47.8
TkA08G066550PF06419COG6_N1471780.3511.7
TkA08G066550PF30118MSD11572590.03814.7
TkA08G066550PF01025GrpE1612743.4e-2382.8
TkA08G066550PF29057SYN8_N1621980.6511.2
TkA08G066550PF06419COG6_N1962530.3511.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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