TkA08G065620 | RubberDandelionOmics

Gene overview

TkA08G065620

Reference: TK1151 Chr: Chr08 Coordinates: 16835097-16836070 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

905 bp · TkA08G065620|TK1151|cDNA

TTATCTCAATCGTTCACTGAAGCATTTCATACTCCCTCCATCCCCAATTTCAACGCAAAACTAGGTGTTTTGTTTCAATTAGATAATCGGAAAATGACAGATGAAGTGAAGTTGTATGGTGCTAAGGGAAGTCCATTCGCTTGCAGAGTGAAAATCGCTTTGAATACGAAGGGAATCAAATACGAAAACATCGAAGAAGATATCTTCAACAAGAGTGCCGACCTATTAAAGTATAATCCTGTTCATAAGAAAGTACCGGT...

CDS

Download CDS FASTA

753 bp · TkA08G065620|TK1151|CDS

TTATCTCAATCGTTCACTGAAGCATTTCATACTCCCTCCATCCCCAATTTCAACGCAAAACTAGGTGTTTTGTTTCAATTAGATAATCGGAAAATGACAGATGAAGTGAAGTTGTATGGTGCTAAGGGAAGTCCATTCGCTTGCAGAGTGAAAATCGCTTTGAATACGAAGGGAATCAAATACGAAAACATCGAAGAAGATATCTTCAACAAGAGTGCCGACCTATTAAAGTATAATCCTGTTCATAAGAAAGTACCGGT...

Protein

Download Protein FASTA

250 aa · TkA08G065620|TK1151|PROTEIN

LSQSFTEAFHTPSIPNFNAKLGVLFQLDNRKMTDEVKLYGAKGSPFACRVKIALNTKGIKYENIEEDIFNKSADLLKYNPVHKKVPVLVHNGNPIAESLVILEYIDDVWKGVPIMPRDSYERALARFWAKFLDDKCIPALKAVGSNGDEKVVAEACEQLQILENELKLKGTKFFGGDDINLIDIAGVFIAFWLGIREEVAGIKFFTEDKFPKLTKWAHDFVNREAVKDALPPREHTLGFYNKMFGKINRV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G065620`
TK1151 ID	TkA08G065620
OH-1004 ID	LXL04_018509
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 43.478 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G065620

Location Chr08:16835097-16836070 (-)

Description Similar to HSP26-A: Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09270`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018509 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009408 response to heat Biological Process

GO:0009733 response to auxin Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0010038 response to metal ion Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004364 glutathione transferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G09270

gmx:100527851

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.642

Rank 1 · TkA08G065620 · TK1151

Nucleus0.145

Rank 2 · TkA08G065620 · TK1151

Peroxisome0.122

Rank 3 · TkA08G065620 · TK1151

Mitochondrion0.101

Rank 4 · TkA08G065620 · TK1151

Endoplasmic reticulum0.082

Rank 5 · TkA08G065620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798GST_N35-106 aa

PF13417GST_N_338-107 aa

PF13409GST_N_244-107 aa

PF22441CLIC-like_N44-108 aa

PF13410GST_C_2120-129 aa

PF13409GST_N_2136-164 aa

PF00043GST_C149-224 aa

PF25907DUF7962151-228 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G065620	`PF02798`	GST_N	35	106	6.3e-21	75.2
TkA08G065620	`PF13417`	GST_N_3	38	107	5.4e-16	59.4
TkA08G065620	`PF13409`	GST_N_2	44	107	1.2e-15	58.6
TkA08G065620	`PF22441`	CLIC-like_N	44	108	0.009	16.9
TkA08G065620	`PF13410`	GST_C_2	120	129	0.12	13.2
TkA08G065620	`PF13409`	GST_N_2	136	164	1.2e-15	58.6
TkA08G065620	`PF00043`	GST_C	149	224	1.4e-09	38.8
TkA08G065620	`PF25907`	DUF7962	151	228	0.0024	18.7
TkA08G065620	`PF22441`	CLIC-like_N	156	173	0.009	16.9
TkA08G065620	`PF14497`	GST_C_3	158	228	0.072	14.0
TkA08G065620	`PF13410`	GST_C_2	158	216	0.12	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SR36`	Arabidopsis thaliana	sp\|Q9SR36\|GSTU8_ARATH Glutathione S-transferase U8	52.300%	Swiss-Prot	High

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