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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G063890
Reference: TK1151 Chr: Chr08 Coordinates: 16331303-16334299 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2390 bp · TkA08G063890|TK1151|cDNA

GGAAGACTCGAAGTCATTTAAACCACTTGTATCAAATAATGTACCTTGTTTATAAACTTCCACCCAAGAAAATCGATCTTGGTTTTCTGAAACCCCCAGCTGCCTTTCGAGTGAACGAGTGATTGACTCACCCCCAAGATCCGCTCCGCCGACAGCTCCATTCATTCCATTCCGTCATGGATCCCCATGAGTGATCACACTCTTCGTCACTCCCAAATCTCACTTCCCAAAATCCCAATTCAAAGTCTCTTGATTCCTTT...

CDS

Download CDS FASTA

1806 bp · TkA08G063890|TK1151|CDS

ATGGGTGGACTTAAGTGGTCGACGTCAGCCTTCGATTTGAAGTCAGGGCAAACGATTCTGTTAGCTCTTCTAGTAATGATTCTTTCTTTCTACAGCGGCACCTTTTTCGGCCGGAATTCTTCGATTTATGTAAATCAACTCGCCGTGAACTCTTCATCATCGACATCACTAGGTAACCCTACATTTAGTAACAGAGTCGCTCTTACTTATCGACAATCACCACTTACGATTCCAGAAACTGGAATGGACATATGCCCTAT...

Protein

Download Protein FASTA

601 aa · TkA08G063890|TK1151|PROTEIN

MGGLKWSTSAFDLKSGQTILLALLVMILSFYSGTFFGRNSSIYVNQLAVNSSSSTSLGNPTFSNRVALTYRQSPLTIPETGMDICPIEFNEHIPCHDPSYINKLRKQLDLSKREDIERHCPPLEKRLFCLIPPPIDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWFPGGGTHFKHGASEYIERLGNLTTNETGDLRSSGVYQVLDVGCGVASFSAYLLPLNIQTMSFAPKDGHENQIQFALERGIGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G063890
TK1151 IDTkA08G063890
OH-1004 IDLXL04_000323
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)77.900
Protein coverage (%)TK1151 98.336 / OH-1004 99.158
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G063890
LocationChr08:16331303-16334299 (-)
DescriptionSimilar to At3g10200: Probable methyltransferase PMT6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10200 Probable methyltransferase PMT6. No verified direct reference in this release
At5g04060 Probable methyltransferase PMT7. No verified direct reference in this release
At1g04430 Probable methyltransferase PMT8. No verified direct reference in this release
At5g14430 Probable methyltransferase PMT9. No verified direct reference in this release
At3g23300 Probable methyltransferase PMT1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000323 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G04430
ath:AT3G10200
ath:AT3G23300
ath:AT4G14360
ath:AT5G04060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.774
Rank 1 · TkA08G063890 · TK1151
Endoplasmic reticulum0.091
Rank 2 · TkA08G063890 · TK1151
Cell membrane0.058
Rank 3 · TkA08G063890 · TK1151
Extracellular0.047
Rank 4 · TkA08G063890 · TK1151
Cytoplasm0.047
Rank 5 · TkA08G063890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_2991-595 aa
PF13489Methyltransf_23207-324 aa
PF13847Methyltransf_31214-325 aa
PF13649Methyltransf_25216-308 aa
PF08241Methyltransf_11217-311 aa
PF08242Methyltransf_12217-310 aa
PF13649Methyltransf_25337-366 aa
PF08242Methyltransf_12347-367 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G063890PF03141Methyltransf_29915951.3e-200668.1
TkA08G063890PF13489Methyltransf_232073243.9e-0524.1
TkA08G063890PF13847Methyltransf_312143251.8e-0731.8
TkA08G063890PF13649Methyltransf_252163081.1e-0733.1
TkA08G063890PF08241Methyltransf_112173111.2e-0939.4
TkA08G063890PF08242Methyltransf_122173100.0001423.2
TkA08G063890PF13649Methyltransf_253373661.1e-0733.1
TkA08G063890PF08242Methyltransf_123473670.0001423.2
TkA08G063890PF13649Methyltransf_255055501.1e-0733.1
TkA08G063890PF13489Methyltransf_235065573.9e-0524.1
TkA08G063890PF08242Methyltransf_125085510.0001423.2
TkA08G063890PF13847Methyltransf_315105581.8e-0731.8
TkA08G063890PF08241Methyltransf_115135541.2e-0939.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84TJ0Arabidopsis thalianasp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT668.300%Swiss-ProtHigh
Q9LZA4Arabidopsis thalianasp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT767.000%Swiss-ProtHigh
Q940J9Arabidopsis thalianasp|Q940J9|PMT8_ARATH Probable methyltransferase PMT847.000%Swiss-ProtMedium
Q8VZV7Arabidopsis thalianasp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT946.200%Swiss-ProtMedium
Q8H118Arabidopsis thalianasp|Q8H118|PMT1_ARATH Probable methyltransferase PMT146.800%Swiss-ProtMedium

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