TkA08G063510 | RubberDandelionOmics

Gene overview

TkA08G063510

Reference: TK1151 Chr: Chr08 Coordinates: 16233017-16236237 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1176 bp · TkA08G063510|TK1151|cDNA

ATGAAGCAGCAATTAAATGAGGAGTATACAATGTCAAATTACCTATGCGAAGAGATAATTGTTGAAATATTTACAAGACTACCGTCCAAATCTCTCCTGCGATTTAAATCACTCTCTAAATCATTATGTTGTTGTATTTCTAAACCTGGTTTCGCACACATCCACAATCTTCGATCCCCGCACAGACTCATCGTAAGACATAAGACAATTTACAACTCTAAAGAAGTAATGTTCTATACAATGCATGGAAAAGACCAATT...

CDS

Download CDS FASTA

1176 bp · TkA08G063510|TK1151|CDS

ATGAAGCAGCAATTAAATGAGGAGTATACAATGTCAAATTACCTATGCGAAGAGATAATTGTTGAAATATTTACAAGACTACCGTCCAAATCTCTCCTGCGATTTAAATCACTCTCTAAATCATTATGTTGTTGTATTTCTAAACCTGGTTTCGCACACATCCACAATCTTCGATCCCCGCACAGACTCATCGTAAGACATAAGACAATTTACAACTCTAAAGAAGTAATGTTCTATACAATGCATGGAAAAGACCAATT...

Protein

Download Protein FASTA

391 aa · TkA08G063510|TK1151|PROTEIN

MKQQLNEEYTMSNYLCEEIIVEIFTRLPSKSLLRFKSLSKSLCCCISKPGFAHIHNLRSPHRLIVRHKTIYNSKEVMFYTMHGKDQLPLCTTHAYNGTTPFGRYGDIVGSCNGTLCLFDYEENHMNLWNPSTRHKLSLPDCSRILGVRYRWFGFGYDPINDDYKIIWDHWQKMLECSFVYSVKTRTWCEIASPIDLKTKLLVVSHFVNGVLHWVVHQHELRDTNLPYIMTFDLSTYVFGMIPLHDPNLQWETRLTTIQGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G063510`
TK1151 ID	TkA08G063510
OH-1004 ID	LXL04_018476
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.300
Protein coverage (%)	TK1151 74.680 / OH-1004 91.824 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G063510

Location Chr08:16233017-16236237 (+)

Description Similar to CPR1: F-box protein CPR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12560`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03995.x
`At1g50870`	Putative F-box protein At1g50870.	No verified direct reference in this release
`At3g07870`	F-box protein At3g07870.	No verified direct reference in this release
`At3g52320`	Putative F-box protein At3g52320.	No verified direct reference in this release
`At4g19930`	F-box/kelch-repeat protein At4g19930.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018476 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G07870

ath:AT3G16210

ath:AT4G12560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.589

Rank 1 · TkA08G063510 · TK1151

Nucleus0.402

Rank 2 · TkA08G063510 · TK1151

Cell membrane0.117

Rank 3 · TkA08G063510 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA08G063510 · TK1151

Lysosome / Vacuole0.043

Rank 5 · TkA08G063510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box15-51 aa

PF12937F-box-like17-49 aa

PF24750b-prop_At3g26010-like46-78 aa

PF08268FBA_3101-278 aa

PF03478Beta-prop_KIB1-4104-265 aa

PF07734FBA_1108-288 aa

PF24750b-prop_At3g26010-like163-287 aa

PF12937F-box-like185-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G063510	`PF00646`	F-box	15	51	1.1e-05	25.8
TkA08G063510	`PF12937`	F-box-like	17	49	0.018	15.5
TkA08G063510	`PF24750`	b-prop_At3g26010-like	46	78	0.00054	19.9
TkA08G063510	`PF08268`	FBA_3	101	278	4.6e-18	66.0
TkA08G063510	`PF03478`	Beta-prop_KIB1-4	104	265	3.1e-06	27.6
TkA08G063510	`PF07734`	FBA_1	108	288	3.2e-12	46.8
TkA08G063510	`PF24750`	b-prop_At3g26010-like	163	287	0.00054	19.9
TkA08G063510	`PF12937`	F-box-like	185	192	0.018	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU30`	Arabidopsis thaliana	sp\|Q9SU30\|CPR1_ARATH F-box protein CPR1	27.200%	Swiss-Prot	Low
`Q9C6J3`	Arabidopsis thaliana	sp\|Q9C6J3\|FB52_ARATH Putative F-box protein At1g50870	24.400%	Swiss-Prot	Low
`Q9SFC7`	Arabidopsis thaliana	sp\|Q9SFC7\|FB135_ARATH F-box protein At3g07870	24.200%	Swiss-Prot	Low
`Q9FT50`	Arabidopsis thaliana	sp\|Q9FT50\|FB202_ARATH Putative F-box protein At3g52320	26.000%	Swiss-Prot	Low
`O49420`	Arabidopsis thaliana	sp\|O49420\|FBK86_ARATH F-box/kelch-repeat protein At4g19930	23.400%	Swiss-Prot	Low

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