TkA08G061880 | RubberDandelionOmics

Gene overview

TkA08G061880

Reference: TK1151 Chr: Chr08 Coordinates: 15828010-15829386 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1347 bp · TkA08G061880|TK1151|cDNA

ATGGTGCCTTTTACAGCACAAGGCCATCTCAACCAACTCCTCCACCTCTCCCGTCTCATCTCCGCCTACAACCTCCCCGTCCACTTCGTCTGCGCCACCACTCACACCCGCCAAGCCAAGCTTCGCAACCATGGATGGGACACACTATCCATCCACTTCCATGAATTCCCAGTACCTTCCTTCCAAAACCCACCACCCAACCCCAACATCCCCCTCCGCTTCCCCAACCACCTCATGCCGGCGTTCAAAGCCATAATGTT...

CDS

Download CDS FASTA

1347 bp · TkA08G061880|TK1151|CDS

ATGGTGCCTTTTACAGCACAAGGCCATCTCAACCAACTCCTCCACCTCTCCCGTCTCATCTCCGCCTACAACCTCCCCGTCCACTTCGTCTGCGCCACCACTCACACCCGCCAAGCCAAGCTTCGCAACCATGGATGGGACACACTATCCATCCACTTCCATGAATTCCCAGTACCTTCCTTCCAAAACCCACCACCCAACCCCAACATCCCCCTCCGCTTCCCCAACCACCTCATGCCGGCGTTCAAAGCCATAATGTT...

Protein

Download Protein FASTA

448 aa · TkA08G061880|TK1151|PROTEIN

MVPFTAQGHLNQLLHLSRLISAYNLPVHFVCATTHTRQAKLRNHGWDTLSIHFHEFPVPSFQNPPPNPNIPLRFPNHLMPAFKAIMLHLREPIAKLLSDLSPTAKRIVIIHDYLMSSVVQDFSSVANAEVYMFQSCCAFTAFWYHWEETKTVKLDDETEFLRKNVLPSLEGCFSNEFFEFLESEDSSFKKISSGTLYDTSKVFEEKYLELLKCESGSGTTKNWAIGPFNPISVTNHKNTSTESRRILSWLDKQEENSVIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G061880`
TK1151 ID	TkA08G061880
OH-1004 ID	LXL04_018453
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 97.863 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G061880`
Location	Chr08:15828010-15829386 (-)
Description	Similar to ZOG1: Zeatin O-glucosyltransferase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018453` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009101 glycoprotein biosynthetic process Biological Process GO:0009690 cytokinin metabolic process Biological Process GO:0009965 leaf morphogenesis Biological Process GO:0010015 root morphogenesis Biological Process GO:0010083 regulation of vegetative meristem growth Biological Process GO:0010380 regulation of chlorophyll biosynthetic process Biological Process GO:0010817 regulation of hormone levels Biological Process GO:0045926 negative regulation of growth Biological Process GO:0048316 seed development Biological Process GO:0048439 flower morphogenesis Biological Process GO:0080036 regulation of cytokinin-activated signaling pathway Biological Process GO:0035251 UDP-glucosyltransferase activity Molecular Function
KEGG gene cross-reference	ag:AAD04166 zma:541881 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.795

Rank 1 · TkA08G061880 · TK1151

Nucleus0.276

Rank 2 · TkA08G061880 · TK1151

Endoplasmic reticulum0.065

Rank 3 · TkA08G061880 · TK1151

Peroxisome0.055

Rank 4 · TkA08G061880 · TK1151

Cell membrane0.046

Rank 5 · TkA08G061880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168Glyco_transf_N1-230 aa

PF00201UDPGT234-383 aa

PF06722EryCIII-like_C329-406 aa

PF12373Msg2_C424-443 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G061880	`PF26168`	Glyco_transf_N	1	230	6.4e-72	242.9
TkA08G061880	`PF00201`	UDPGT	234	383	4e-22	79.4
TkA08G061880	`PF06722`	EryCIII-like_C	329	406	0.19	12.4
TkA08G061880	`PF12373`	Msg2_C	424	443	0.11	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card