TkA08G059490 | RubberDandelionOmics

Gene overview

TkA08G059490

Reference: TK1151 Chr: Chr08 Coordinates: 15272347-15273410 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

516 bp · TkA08G059490|TK1151|cDNA

ATGTATTTTACGAGTATGGTTCAGTATATGAGGGAGCAGTTATGGAGTATTTGTTCGAAGGCGTTTAGATCGAGAGTGAGCAGTTACAAAAGAGGACTTGACCAAAGATTTAATCCTCATTTTTGGAAATTAAGTTCTGCCTTTGCGAAAACCGAAACTGAATTCATTGCTTGTGCCCGTGAAAAGGTTGCGAGCTCACCATCGATCGATGGTGCGGTTGCAAGCTGTTTGGTTGCTTTCGTGCGGGACCAAAAGGCACT...

CDS

Download CDS FASTA

516 bp · TkA08G059490|TK1151|CDS

ATGTATTTTACGAGTATGGTTCAGTATATGAGGGAGCAGTTATGGAGTATTTGTTCGAAGGCGTTTAGATCGAGAGTGAGCAGTTACAAAAGAGGACTTGACCAAAGATTTAATCCTCATTTTTGGAAATTAAGTTCTGCCTTTGCGAAAACCGAAACTGAATTCATTGCTTGTGCCCGTGAAAAGGTTGCGAGCTCACCATCGATCGATGGTGCGGTTGCAAGCTGTTTGGTTGCTTTCGTGCGGGACCAAAAGGCACT...

Protein

Download Protein FASTA

171 aa · TkA08G059490|TK1151|PROTEIN

MYFTSMVQYMREQLWSICSKAFRSRVSSYKRGLDQRFNPHFWKLSSAFAKTETEFIACAREKVASSPSIDGAVASCLVAFVRDQKALTTEHSEKWGILDEPIRDPILCSVPSFSVRDIEPRDSFIVVASDGLWNILSNGEVVQFVYDNRGKNVRDCKAIGGESNEKSGRDA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G059490`
TK1151 ID	TkA08G059490
OH-1004 ID	LXL04_018429
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 88.889 / OH-1004 64.621 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G059490

Location Chr08:15272347-15273410 (-)

Description Similar to Os03g0137200: Probable protein phosphatase 2C 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66080`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0717800`	Probable protein phosphatase 2C 60.	No verified direct reference in this release
`Os03g0137200`	Probable protein phosphatase 2C 28.	No verified direct reference in this release
`Os03g0832400`	Probable protein phosphatase 2C 36.	No verified direct reference in this release
`Os02g0685600`	Probable protein phosphatase 2C 25.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1900036 positive regulation of cellular response to heat Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G38520

ath:AT5G66080

dosa:Os03g0137200

dosa:Os03g0761100

osa:4331548

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.445

Rank 1 · TkA08G059490 · TK1151

Cytoplasm0.387

Rank 2 · TkA08G059490 · TK1151

Mitochondrion0.128

Rank 3 · TkA08G059490 · TK1151

Cell membrane0.094

Rank 4 · TkA08G059490 · TK1151

Endoplasmic reticulum0.068

Rank 5 · TkA08G059490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C17-84 aa

PF00481PP2C107-151 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G059490	`PF00481`	PP2C	17	84	2.3e-09	38.0
TkA08G059490	`PF00481`	PP2C	107	151	2.3e-09	38.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKX4`	Arabidopsis thaliana	sp\|Q9FKX4\|P2C79_ARATH Probable protein phosphatase 2C 79	50.000%	Swiss-Prot	Low
`Q5Z8P0`	Oryza sativa subsp. japonica	sp\|Q5Z8P0\|P2C60_ORYSJ Probable protein phosphatase 2C 60	51.000%	Swiss-Prot	Low
`Q10S32`	Oryza sativa subsp. japonica	sp\|Q10S32\|P2C28_ORYSJ Probable protein phosphatase 2C 28	49.000%	Swiss-Prot	Low
`Q7Y138`	Oryza sativa subsp. japonica	sp\|Q7Y138\|P2C36_ORYSJ Probable protein phosphatase 2C 36	38.000%	Swiss-Prot	Low
`Q6ZHC8`	Oryza sativa subsp. japonica	sp\|Q6ZHC8\|P2C25_ORYSJ Probable protein phosphatase 2C 25	45.100%	Swiss-Prot	Low

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