RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G059400
Reference: TK1151 Chr: Chr08 Coordinates: 15237152-15240585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1995 bp · TkA08G059400|TK1151|cDNA

CCGCCTCAGAAATATTTTATAATTTTCACAAAAATAACAAATTTTTATAGGAATTATTAAAAGACAAATTACTTAAATTTAGATGAAGAAATGCCAAATTTTATTTTGGATCATACTAAATTCATAGAGATCTAAATTCATAAGTAAGAAACGGAAAAAGTTCACAGAAAGAAAAAGAGGGCCGGTATGCAAGTTTCATGAACCGAATGCGACCAAAGGAGCCATCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTTCCC...

CDS

Download CDS FASTA

1173 bp · TkA08G059400|TK1151|CDS

ATGGGAGAAGCCCCGGCTTTCTTCGTTGATGATATGCAAAGGAGTTTCTCGAGTGGATTTGATCTCAAACTCAAACACTTCGATACAGCCACTGTTATTGGAAACAAAACATATGTCATCAATGGGACTGATGATCCATCATCAACGGAAGTTCGCATCCTCAACAAATCTACCGGCGAATGGGTGATTCCAACAGTTCTAGGAACAAAACCAAAGTCGCTAAAATCCCACTCATGTCTGGTTCTAAACAAAGATCGAAT...

Protein

Download Protein FASTA

390 aa · TkA08G059400|TK1151|PROTEIN

MGEAPAFFVDDMQRSFSSGFDLKLKHFDTATVIGNKTYVINGTDDPSSTEVRILNKSTGEWVIPTVLGTKPKSLKSHSCLVLNKDRILIIKNNSKSDECVWFLEVDTQFIRDQNTKCDTEIVAWSKGVIGNSERPVVISGPSGVGKGTLINKLMKDFPSMFGFSVSHTTRLPREKETNGIHYHFTKRNVMEEEIKSGRFLEFAAVHGNLYGTSIESVDVVADAGKRCILDIDVQGARSVRTSSLEAIFIFVCPPSFEELE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G059400
TK1151 IDTkA08G059400
OH-1004 IDLXL04_022065
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)33.800
Protein coverage (%)TK1151 49.231 / OH-1004 79.167
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G059400
LocationChr08:15237152-15240585 (-)
DescriptionSimilar to V2: Guanylate kinase 2, chloroplastic/mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57550 Essential for recycling GMP and indirectly, cGMP. No verified direct reference in this release
At2g41880 Essential for recycling GMP and indirectly, cGMP.
Cloning of the guanylate kinase homologues AGK-1 and AGK-2 from Arabidopsis thaliana and characterization of AGK-1.2000 · DOI: 10.1046/j.1432-1327.2000.01045.x

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0515600 Essential for recycling GMP and indirectly, cGMP. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022065 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0048638 regulation of developmental growth Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004385 GMP kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G06200
cdf:CD630_25880
deh:cbdbA42
det:DET0035
dosa:Os03g0320900
pdc:CDIF630_02842
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.528
Rank 1 · TkA08G059400 · TK1151
Nucleus0.333
Rank 2 · TkA08G059400 · TK1151
Mitochondrion0.122
Rank 3 · TkA08G059400 · TK1151
Cell membrane0.093
Rank 4 · TkA08G059400 · TK1151
Endoplasmic reticulum0.066
Rank 5 · TkA08G059400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_166-26 aa
PF12775AAA_76-13 aa
PF13854Kelch_HCF19-90 aa
PF25210Kelch_FKB9528-72 aa
PF13415Beta-prop_FBX4229-107 aa
PF24681Kelch_KLHDC2_KLHL20_DRC729-108 aa
PF01344Kelch_129-62 aa
PF07646Kelch_230-67 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G059400PF13191AAA_166260.0008220.6
TkA08G059400PF12775AAA_76130.02315.0
TkA08G059400PF13854Kelch_HCF19900.02214.8
TkA08G059400PF25210Kelch_FKB9528720.1312.6
TkA08G059400PF13415Beta-prop_FBX42291077.8e-0832.9
TkA08G059400PF24681Kelch_KLHDC2_KLHL20_DRC7291085.3e-0626.6
TkA08G059400PF01344Kelch_129620.04913.9
TkA08G059400PF07646Kelch_230670.06913.9
TkA08G059400PF03215Rad1748700.1612.6
TkA08G059400PF27228MTBMA_p00010_2nd1061640.05713.7
TkA08G059400PF07646Kelch_21151260.06913.9
TkA08G059400PF19044P-loop_TraG1181570.310.4
TkA08G059400PF12775AAA_71281580.02315.0
TkA08G059400PF01637ATPase_21311940.008916.6
TkA08G059400PF13191AAA_161321670.0008220.6
TkA08G059400PF20720nSTAND31321570.01915.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M682Arabidopsis thalianasp|Q9M682|GMK2_ARATH Guanylate kinase 260.400%Swiss-ProtHigh
P93757Arabidopsis thalianasp|P93757|GMK1_ARATH Guanylate kinase 156.700%Swiss-ProtHigh
Q2QPW1Oryza sativa subsp. japonicasp|Q2QPW1|GMK1_ORYSJ Guanylate kinase 161.300%Swiss-ProtHigh

JBrowse

View in Genome Browser