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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G059250
Reference: TK1151 Chr: Chr08 Coordinates: 15179705-15181105 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1257 bp · TkA08G059250|TK1151|cDNA

ATGATCATCTTTGGATTTACAAATGTGATAAATGTATGTATTATGCTCATTTGGATTGTGCAATATCAGGAAGAAGGCATTATATGGGTGGGCCCGCCTTACCCGCTGGATTTGATAAAGCCACACCATATTTTAAAGATGTTGACTACCCTCATCTTCTCCATCTCCCATTCCCATGAAACTCATAGCATACCAAAACACTTGTTTTCCAAAGAAATTAGATCTGGAACGTTGAGAAGTAATGAGGTAAACCCGAAACA...

CDS

Download CDS FASTA

1257 bp · TkA08G059250|TK1151|CDS

ATGATCATCTTTGGATTTACAAATGTGATAAATGTATGTATTATGCTCATTTGGATTGTGCAATATCAGGAAGAAGGCATTATATGGGTGGGCCCGCCTTACCCGCTGGATTTGATAAAGCCACACCATATTTTAAAGATGTTGACTACCCTCATCTTCTCCATCTCCCATTCCCATGAAACTCATAGCATACCAAAACACTTGTTTTCCAAAGAAATTAGATCTGGAACGTTGAGAAGTAATGAGGTAAACCCGAAACA...

Protein

Download Protein FASTA

418 aa · TkA08G059250|TK1151|PROTEIN

MIIFGFTNVINVCIMLIWIVQYQEEGIIWVGPPYPLDLIKPHHILKMLTTLIFSISHSHETHSIPKHLFSKEIRSGTLRSNEVNPKHFSHQHPLILVEAQCNDTIKQTSSKINNSLLCHNPMKKIQLLCNGCLRPITAMPFFKCANEDDHCNFALHEWCTRLPVEIENHLGHPQHTLVLMANVLKMFFGVFHCCVCGLPCNGFAYGCVECEYYVDVTCGFIPKEIIHKSHPHTLSADHTYNFPYDPCHMCLLVRKEQPVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G059250
TK1151 IDTkA08G059250
OH-1004 IDLXL04_018105
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)46.500
Protein coverage (%)TK1151 37.321 / OH-1004 26.167
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G059250
LocationChr08:15179705-15181105 (-)
DescriptionSimilar to Tf2-11: Transposon Tf2-11 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
spo:2538755
spo:2540036
spo:2541833
spo:2541991
spo:2542763
spo:2542903
spo:3361422
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.375
Rank 1 · TkA08G059250 · TK1151
Nucleus0.291
Rank 2 · TkA08G059250 · TK1151
Endoplasmic reticulum0.169
Rank 3 · TkA08G059250 · TK1151
Extracellular0.098
Rank 4 · TkA08G059250 · TK1151
Cell membrane0.086
Rank 5 · TkA08G059250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03107C1_288-99 aa
PF03107C1_2120-159 aa
PF00130C1_1129-161 aa
PF03107C1_2172-218 aa
PF00130C1_1191-218 aa
PF31197PHD_JHD1205-231 aa
PF03107C1_2228-274 aa
PF00130C1_1247-279 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G059250PF03107C1_288991.8e-2692.9
TkA08G059250PF03107C1_21201591.8e-2692.9
TkA08G059250PF00130C1_11291615.4e-1039.7
TkA08G059250PF03107C1_21722181.8e-2692.9
TkA08G059250PF00130C1_11912185.4e-1039.7
TkA08G059250PF31197PHD_JHD12052315.17.8
TkA08G059250PF03107C1_22282741.8e-2692.9
TkA08G059250PF00130C1_12472795.4e-1039.7
TkA08G059250PF31197PHD_JHD12472745.17.8
TkA08G059250PF03107C1_22863341.8e-2692.9
TkA08G059250PF00130C1_12993395.4e-1039.7
TkA08G059250PF31197PHD_JHD13053515.17.8
TkA08G059250PF03107C1_23684111.8e-2692.9
TkA08G059250PF00130C1_13804165.4e-1039.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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