TkA08G059120 | RubberDandelionOmics

Gene overview

TkA08G059120

Reference: TK1151 Chr: Chr08 Coordinates: 15141864-15142897 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

861 bp · TkA08G059120|TK1151|cDNA

CAGAAATAATCATCGTCTACCACTATAGGCTGTCTGCCACTCTGCCTGTCTTCACTTTCACATCCGAAATCAATCCCAAATCGAATATATGTTGTCTGCCACTCTACTAGTGGCACAGGCTGTCTGCCTCTTCTCCCTCTCCAAAACCTCTTATCCCTCTCAATCTCTCAGAAATTCAAAACCCTCTGCAAATCCACTCCATCTACAAATCCGAGCCGCGTAATCGACCACAATGCTACTCGCATTTCTCTATTTCTGTA...

CDS

Download CDS FASTA

531 bp · TkA08G059120|TK1151|CDS

ATGCACAATCAAGTTAAATCACCCCCAAATCCACGTACCGTCTACGCATCCTCTTCCTTATCCGATGAGGGTGCTCCACTGGATGACGCTAGGCCGTCTAACATCGATCGAAGAAAATTGTTGGTGTCATCATTAGCGGTCTCATTGGGAAGCTCGTTAGGAAATGGAGTAGCAATGGCGTCCAATTTCGCAGACATGCCAGCCCTAAAGGGGAAGGATTATGGGAAAACGAAGATGAAGTATCCCGATTATGAAGAAAC...

Protein

Download Protein FASTA

176 aa · TkA08G059120|TK1151|PROTEIN

MHNQVKSPPNPRTVYASSSLSDEGAPLDDARPSNIDRRKLLVSSLAVSLGSSLGNGVAMASNFADMPALKGKDYGKTKMKYPDYEETSSGLQYKVSDSKPSARPLQFTAVLRWSSSSLVFFTAVLRETTASSLFRCLSDDLCFMFLNVPDCRFMLHVSIPDLCFMFLFPIYASCCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G059120`
TK1151 ID	TkA08G059120
OH-1004 ID	LXL04_025712
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.000
Protein coverage (%)	TK1151 64.205 / OH-1004 44.531 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G059120

Location Chr08:15141864-15142897 (+)

Description Similar to FKBP19: Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13410`	PPIases accelerate the folding of proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025712 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031977 thylakoid lumen Cellular Component

GO:0003755 peptidyl-prolyl cis-trans isomerase activity Molecular Function

KEGG gene cross-reference

afm:AFUA_6G08580

ath:AT2G43560

ath:AT4G19830

ath:AT5G13410

ddi:DDB_G0285357

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.954

Rank 1 · TkA08G059120 · TK1151

Cytoplasm0.035

Rank 2 · TkA08G059120 · TK1151

Nucleus0.029

Rank 3 · TkA08G059120 · TK1151

Mitochondrion0.027

Rank 4 · TkA08G059120 · TK1151

Endoplasmic reticulum0.024

Rank 5 · TkA08G059120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16391DUF500070-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G059120	`PF16391`	DUF5000	70	120	0.3	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYR5`	Arabidopsis thaliana	sp\|Q9LYR5\|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic	57.000%	Swiss-Prot	Low

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