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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G058140
Reference: TK1151 Chr: Chr08 Coordinates: 14858284-14860294 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1681 bp · TkA08G058140|TK1151|cDNA

TCTTAGACCCTTATCCCCAAAATTATTAACATCGAAGATTTTGCATCTCCATCTCGCACCTTGAGCTGAACACGATCGATTTACCTCACGTCTCCCTCAATCCAGTTTGTTATTGACAATCGAGAGGGAGGTAAAGATGGAGAAAGAAGAGTCCATGGATGTCGAATTTAACTGAAGTATTACTTACGAACAAATGCTTCTTGATCGAGCTGCTGAAGAACTCGCACATCGCTTAACCAAGCTTATTAGAAGAACGACGG...

CDS

Download CDS FASTA

1098 bp · TkA08G058140|TK1151|CDS

ATGGGTGACGAAACACCACAGAACGTAATGAATCTCGACCTAAATTTAGGACCGGTCGTTCATCACTCCCGTGAAAACGAACCCGGCGGTTTAAACCTAGAAGATTGGTTAGATGGGCCCGTAAGAGAAGTAATCAACCACCGAACAATAGCAAGACAAAGATGGCGGTCAATTTGGAGACCCGTTCTTTTCCCAATGGAAACCACAAACATGGCTCTTGAATTAATAACCGGAAGTAACCCAAGTGGTTCAGAAACCGG...

Protein

Download Protein FASTA

365 aa · TkA08G058140|TK1151|PROTEIN

MGDETPQNVMNLDLNLGPVVHHSRENEPGGLNLEDWLDGPVREVINHRTIARQRWRSIWRPVLFPMETTNMALELITGSNPSGSETGEGSVAAAGRPPAKAACDTTYPENEIQEEKQDIAKKSNENEGGFFDCNICLDMASDPVVTCCGHLFCWPCLYRWLHVHEKECPICKGEMSIKSVTPIYGRGNPTRVVVEEDSGLKIPHRPQAKRVESWRQTIQRNAFTMPMEEMIRRLGSRFDLTRDLVPGQPDNPREITNNSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G058140
TK1151 IDTkA08G058140
OH-1004 IDLXL04_018386
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G058140
LocationChr08:14858284-14860294 (-)
DescriptionSimilar to RMA3: E3 ubiquitin-protein ligase RMA3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27470 E3 ubiquitin-protein ligase.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
At4g03510 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1.
Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase.2001 · DOI: 10.1242/jcs.114.10.1949
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
Drought stress-induced Rma1H1, a RING membrane-anchor E3 ubiquitin ligase homolog, regulates aquaporin levels via ubiquitination in transgenic Arabidopsis plants.2009 · DOI: 10.1105/tpc.108.061994
At4g28270 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1.2010 · DOI: 10.1016/j.bbrc.2010.02.032

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018386 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006914 autophagy Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009723 response to ethylene Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0018996 molting cycle, collagen and cuticulin-based cuticle Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0040039 inductive cell migration Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
KEGG gene cross-reference
ath:AT4G27470
cann:107855034
cel:CELE_C16C10.7
gga:416965
mmu:193670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.876
Rank 1 · TkA08G058140 · TK1151
Cytoplasm0.247
Rank 2 · TkA08G058140 · TK1151
Cell membrane0.034
Rank 3 · TkA08G058140 · TK1151
Mitochondrion0.020
Rank 4 · TkA08G058140 · TK1151
Endoplasmic reticulum0.019
Rank 5 · TkA08G058140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05290Baculo_IE-1129-175 aa
PF03854zf-P11131-172 aa
PF13639zf-RING_2132-172 aa
PF14634zf-RING_5132-172 aa
PF13923zf-C3HC4_2133-171 aa
PF13445zf-RING_UBOX133-161 aa
PF00097zf-C3HC4133-171 aa
PF13920zf-C3HC4_3133-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G058140PF05290Baculo_IE-11291750.03214.9
TkA08G058140PF03854zf-P111311720.212.0
TkA08G058140PF13639zf-RING_21321727.3e-0833.3
TkA08G058140PF14634zf-RING_51321723.6e-0730.7
TkA08G058140PF13923zf-C3HC4_21331711.8e-0938.0
TkA08G058140PF13445zf-RING_UBOX1331612.5e-0834.5
TkA08G058140PF00097zf-C3HC41331712.7e-0834.3
TkA08G058140PF13920zf-C3HC4_31331747.9e-0729.5
TkA08G058140PF15227zf-C3HC4_41331710.0001722.4
TkA08G058140PF14447Prok-RING_41331760.004517.6
TkA08G058140PF24921RING_XB3-XBAT311331640.007517.0
TkA08G058140PF21362Sina_RING1331710.9910.3
TkA08G058140PF14570zf-RING_41391736.87.3
TkA08G058140PF12678zf-rbx11401720.002518.7
TkA08G058140PF12861zf-ANAPC111441780.02515.4
TkA08G058140PF13445zf-RING_UBOX1681812.5e-0834.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUK7Arabidopsis thalianasp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA360.600%Swiss-ProtLow
O64425Arabidopsis thalianasp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA140.800%Swiss-ProtLow
P93030Arabidopsis thalianasp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA245.700%Swiss-ProtLow

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