TkA08G057690 | RubberDandelionOmics

Gene overview

TkA08G057690

Reference: TK1151 Chr: Chr08 Coordinates: 14739465-14741407 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1465 bp · TkA08G057690|TK1151|cDNA

ATAGGGGTTACCAAATAAACCAAAAAACGTTTCAAAAACATAAATCGTTTTAAATAACAAAATTCCATACACGGAGACGCCCTTTATCCATTCATGTTTAATTCACTACGCCTTTGAAGTTTGAATACACAGGAGCAAGCAGTCAAAAACGCAACAATGGCGAGAATCTTCAAGAACAAACCCGGATTTATGTACTCAAGGAAATCGGTTGTCTTCCCGTTTACATCTACAAGGTCGATCGAAACCCTAGCTTTCGAAGA...

CDS

Download CDS FASTA

738 bp · TkA08G057690|TK1151|CDS

ATGGTTCTTGTGGATTTGAGGAACCATGGTCGATCAGCTGGATTACCGGGTTTAAATCCCCCACACGACATTCCTAGTGCAGCTAACGATGTTGCTAATCTAGTAAAAACTCAAGGTTGGAATTGGCCTGATGTCGTTTTAGGGCATTCCATGGGAGGCAAGGTGGCCTTACAATACGCCATGAGCTGCGCCCGTGGTGATTATGGCACTTCAGCCAAGTTGCCCAAACAGTTGTGGGTACTGGATTCTGTGCCTGGGAT...

Protein

Download Protein FASTA

245 aa · TkA08G057690|TK1151|PROTEIN

MVLVDLRNHGRSAGLPGLNPPHDIPSAANDVANLVKTQGWNWPDVVLGHSMGGKVALQYAMSCARGDYGTSAKLPKQLWVLDSVPGIVNPEETSGEVEKVLETLKGIPKTIPSRKWLVDHLTNLGFSRSLSEWLGTNLKKSGEQETFAFDLDAIIQMFDSYREMDYWPLLEHPPKGMEIVIVRAENSDRWDPHVTQRLERIDGKKGDESEGKVSVVVLPKSGHWVNVDNPKGLLEMVIPKMASIV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G057690`
TK1151 ID	TkA08G057690
OH-1004 ID	LXL04_018371
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 74.695 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G057690`
Location	Chr08:14739465-14741407 (-)
Description	Similar to abhd11: Protein ABHD11
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018371` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006629 lipid metabolic process Biological Process GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0045252 oxoglutarate dehydrogenase complex Cellular Component GO:0004806 triacylglycerol lipase activity Molecular Function GO:0016298 lipase activity Molecular Function GO:0016740 transferase activity Molecular Function GO:0052689 carboxylic ester hydrolase activity Molecular Function
KEGG gene cross-reference	bta:510109 dre:446169 mmu:68758 sce:YGR031W xla:735011 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · TkA08G057690 · TK1151

Peroxisome0.417

Rank 2 · TkA08G057690 · TK1151

Nucleus0.185

Rank 3 · TkA08G057690 · TK1151

Mitochondrion0.152

Rank 4 · TkA08G057690 · TK1151

Plastid0.056

Rank 5 · TkA08G057690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12697Abhydrolase_62-233 aa

PF00561Abhydrolase_12-61 aa

PF12146Hydrolase_43-63 aa

PF00975Thioesterase10-94 aa

PF20408Abhydrolase_1120-61 aa

PF00756Esterase41-62 aa

PF07819PGAP145-58 aa

PF00561Abhydrolase_1178-230 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G057690	`PF12697`	Abhydrolase_6	2	233	1.2e-12	49.7
TkA08G057690	`PF00561`	Abhydrolase_1	2	61	6.3e-07	30.0
TkA08G057690	`PF12146`	Hydrolase_4	3	63	1.1e-05	25.6
TkA08G057690	`PF00975`	Thioesterase	10	94	0.002	19.1
TkA08G057690	`PF20408`	Abhydrolase_11	20	61	0.091	13.2
TkA08G057690	`PF00756`	Esterase	41	62	0.063	13.8
TkA08G057690	`PF07819`	PGAP1	45	58	0.043	14.3
TkA08G057690	`PF00561`	Abhydrolase_1	178	230	6.3e-07	30.0
TkA08G057690	`PF00975`	Thioesterase	183	204	0.002	19.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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