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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G055040
Reference: TK1151 Chr: Chr08 Coordinates: 14129411-14130844 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1008 bp · TkA08G055040|TK1151|cDNA

ATGGTTGTTTTGATGGTCTCCGCTGCTATTTCCGAGAACTTCTTTCAAGTTGCGACTGAAGGTTGTCATGCAAGATCACCATGTGAGCCATCACGGTTGCCAGTTCTTTCCGAGAACTTCTTTGTGAGTTGTTCCATTTATGAAAAGGGAAAGTTTGATGAACTTGTTGAGGATAAAGGCGTGAAGATTGTGAGAAAGGTGAGAGGCGAGATTCGTAACGACATTTCGATGCTTACCAAACACTTGCAAAAACACTCCAA...

CDS

Download CDS FASTA

1008 bp · TkA08G055040|TK1151|CDS

ATGGTTGTTTTGATGGTCTCCGCTGCTATTTCCGAGAACTTCTTTCAAGTTGCGACTGAAGGTTGTCATGCAAGATCACCATGTGAGCCATCACGGTTGCCAGTTCTTTCCGAGAACTTCTTTGTGAGTTGTTCCATTTATGAAAAGGGAAAGTTTGATGAACTTGTTGAGGATAAAGGCGTGAAGATTGTGAGAAAGGTGAGAGGCGAGATTCGTAACGACATTTCGATGCTTACCAAACACTTGCAAAAACACTCCAA...

Protein

Download Protein FASTA

335 aa · TkA08G055040|TK1151|PROTEIN

MVVLMVSAAISENFFQVATEGCHARSPCEPSRLPVLSENFFVSCSIYEKGKFDELVEDKGVKIVRKVRGEIRNDISMLTKHLQKHSNTVAHIIQTYAQSKQLSKGKLLHAQLITSGYPSCTYLTNNLLLMYARCGQLGYAHRLFDEMPQRNLVSWTAMISAFSQNSEFTKAIATFCEMYISGESPNQFAFSSVIQACSSLKSLQFGKQIHCLSLKVGFSYELFVGSNLADMYSKSDSIIDACMVFEEMPVKDEVSWNSMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G055040
TK1151 IDTkA08G055040
OH-1004 IDLXL04_018330
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.300
Protein coverage (%)TK1151 86.866 / OH-1004 25.939
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G055040
LocationChr08:14129411-14130844 (-)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At2g33680 Pentatricopeptide repeat-containing protein At2g33680. No verified direct reference in this release
At3g24000 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018330 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.616
Rank 1 · TkA08G055040 · TK1151
Plastid0.273
Rank 2 · TkA08G055040 · TK1151
Nucleus0.042
Rank 3 · TkA08G055040 · TK1151
Cytoplasm0.039
Rank 4 · TkA08G055040 · TK1151
Cell membrane0.007
Rank 5 · TkA08G055040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20680DUF681778-120 aa
PF29070MSC6_N79-129 aa
PF13812PPR_382-101 aa
PF05871ESCRT-II84-101 aa
PF23276TPR_2488-102 aa
PF13041PPR_291-104 aa
PF01535PPR92-116 aa
PF13041PPR_2122-151 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G055040PF20680DUF6817781200.1113.3
TkA08G055040PF29070MSC6_N791290.4110.4
TkA08G055040PF13812PPR_3821010.0002221.9
TkA08G055040PF05871ESCRT-II841010.1712.8
TkA08G055040PF23276TPR_24881020.000620.4
TkA08G055040PF13041PPR_2911047.7e-2381.1
TkA08G055040PF01535PPR921164.1e-2277.5
TkA08G055040PF13041PPR_21221517.7e-2381.1
TkA08G055040PF01535PPR1251514.1e-2277.5
TkA08G055040PF13812PPR_31251490.0002221.9
TkA08G055040PF12854PPR_11311471.5e-0938.1
TkA08G055040PF13812PPR_31491970.0002221.9
TkA08G055040PF05871ESCRT-II1501810.1712.8
TkA08G055040PF13041PPR_21511987.7e-2381.1
TkA08G055040PF12854PPR_11511781.5e-0938.1
TkA08G055040PF01535PPR1531784.1e-2277.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial34.700%Swiss-ProtMedium
P93005Arabidopsis thalianasp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g3368033.500%Swiss-ProtMedium
Q9LIQ7Arabidopsis thalianasp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial35.500%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial34.000%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic32.000%Swiss-ProtMedium

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