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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G055000
Reference: TK1151 Chr: Chr08 Coordinates: 14108801-14112010 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2704 bp · TkA08G055000|TK1151|cDNA

TTACTTTTAAGTTTTAATCTTTGATGACGAATCACAAACGTGACGGCCAATAAATGTCCAAATGTTGATACCCGAAGAACACAAAGTTCCATTTCTATTCGATTCAAGATCACAATTTCCCCAAAAACTACGAAAGGCGATCCATTGATGGCGTCTCCGGTACTGGCGAAGGCGGCGGCGAAGGTGAGCTCAGCAGCCCGTCGGCAACCCCTCACGCTAACGGAAGCTGCTGCGGACAGAATACGACAACTCCTTCACAA...

CDS

Download CDS FASTA

2073 bp · TkA08G055000|TK1151|CDS

ATGCTTACCAAACACTTGCAAAAACACTCCAACACCGTGGCGCACATTATCCAAACCTACGCCCAATCCAAACAGCTATCTAAAGGAAAGCTTCTTCATGCGCAGCTCATCACCTCCGGTTACCCATCATGCACCTATCTTACCAATCACCTCTTGTCAATGTATGCAAGATGTGGTCAACTCGGATACGCCCACAGGCTATTCGACGAAATGCCTCAGAGAAACTTGGTATCTTGGACTGCTATGATTTCTGCGTTTTC...

Protein

Download Protein FASTA

690 aa · TkA08G055000|TK1151|PROTEIN

MLTKHLQKHSNTVAHIIQTYAQSKQLSKGKLLHAQLITSGYPSCTYLTNHLLSMYARCGQLGYAHRLFDEMPQRNLVSWTAMISAFSQNSEFTKAIATFCEMYISGESPNQFAFSSVIQACSSLKSLQFGKQIHCLSLKVGFSYELFVGSNLADMYSKSDSIIDACMVFEEMPVKDEVSWNSMIHGYAKNGYNKEALAAFKNMLTEDITIDQHLLCSTFSACGPFKAYNTGKSLHSFITKLGFEQHVSVINALTDMYCKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G055000
TK1151 IDTkA08G055000
OH-1004 IDLXL04_018330
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 61.717
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G055000
LocationChr08:14108801-14112010 (-)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At4g14850 Acts as a regulatory factor of isoprenoid biosynthesis.
Lovastatin insensitive 1, a Novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis.2007 · DOI: 10.1093/pcp/pcm005
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018330 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.720
Rank 1 · TkA08G055000 · TK1151
Plastid0.144
Rank 2 · TkA08G055000 · TK1151
Nucleus0.047
Rank 3 · TkA08G055000 · TK1151
Cytoplasm0.035
Rank 4 · TkA08G055000 · TK1151
Cell membrane0.006
Rank 5 · TkA08G055000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N8-125 aa
PF28753RMD9_N8-24 aa
PF13812PPR_310-25 aa
PF23276TPR_2414-26 aa
PF01535PPR16-40 aa
PF13041PPR_246-75 aa
PF01535PPR49-75 aa
PF12854PPR_149-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G055000PF29070MSC6_N81251.7e-1454.5
TkA08G055000PF28753RMD9_N8240.4211.2
TkA08G055000PF13812PPR_310255e-2484.9
TkA08G055000PF23276TPR_2414264.8e-1556.4
TkA08G055000PF01535PPR16407.1e-53173.9
TkA08G055000PF13041PPR_246752.1e-56188.5
TkA08G055000PF01535PPR49757.1e-53173.9
TkA08G055000PF12854PPR_149715.5e-31106.7
TkA08G055000PF13812PPR_349735e-2484.9
TkA08G055000PF13812PPR_3741215e-2484.9
TkA08G055000PF13041PPR_2751222.1e-56188.5
TkA08G055000PF12854PPR_1751025.5e-31106.7
TkA08G055000PF01535PPR771027.1e-53173.9
TkA08G055000PF23276TPR_24791204.8e-1556.4
TkA08G055000PF28753RMD9_N831200.4211.2
TkA08G055000PF17177PPR_long891231.2e-1041.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365036.800%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317036.700%Swiss-ProtMedium
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151036.900%Swiss-ProtMedium
Q0WSH6Arabidopsis thalianasp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g1485036.600%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic35.800%Swiss-ProtMedium

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