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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G052950
Reference: TK1151 Chr: Chr08 Coordinates: 13527380-13530636 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1295 bp · TkA08G052950|TK1151|cDNA

GTTTAAACTCCCTACGGTACGCACACGGTTACTATTGTGGCCCGTCGCTTAGTTTCCATTAAAACCGATAGCTGTCTACATTTTCGTCTTTGTGCTCGTCAATACCGGAAACTTTCTCTGTCGGCCTCGTTGTACTCTCCCCCATTTTTGCTGGATTGCGCAGGGAGTGACCGGCATACTCACCGCAGAACAGAGGCACCTGTAAACAGAATCGGCGCATTCTAGTTCACCGTCATATAGCTGATGTATTGCTCGCTAAC...

CDS

Download CDS FASTA

651 bp · TkA08G052950|TK1151|CDS

ATGGCTGCTCCACCAGTAAGGGCAAGAGCAGATTATGATTACCTTATCAAGCTCCTCCTAATCGGCGATAGCGGTGTCGGGAAGAGTTGCCTTCTTCTACGTTTTTCTGATGGTTCTTTCACCACTAGTTTCATCACTACAATTGGTATTGATTTCAAGATAAGAACCGTGGAACTCGATGGCAAACGGATCAAACTCCAAATTTGGGACACAGCTGGTCAAGAACGATTCCGAACCATCACAACAGCTTACTACAGGGG...

Protein

Download Protein FASTA

216 aa · TkA08G052950|TK1151|PROTEIN

MAAPPVRARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQVFFSIAKDIKQRLSDTDSKAEPSTIKINQPDATTGNGQLAQKSACCGS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G052950
TK1151 IDTkA08G052950
OH-1004 IDLXL04_000526
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)94.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G052950
LocationChr08:13527380-13530636 (+)
DescriptionSimilar to RABE1C: Ras-related protein RABE1c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46060 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At3g53610 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At5g03520 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At3g09900 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000526 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006887 exocytosis Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0015031 protein transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT3G09900
ath:AT3G46060
ath:AT3G53610
ath:AT5G03520
bvg:104900163
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.492
Rank 1 · TkA08G052950 · TK1151
Golgi apparatus0.474
Rank 2 · TkA08G052950 · TK1151
Cell membrane0.190
Rank 3 · TkA08G052950 · TK1151
Endoplasmic reticulum0.157
Rank 4 · TkA08G052950 · TK1151
Lysosome / Vacuole0.142
Rank 5 · TkA08G052950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf16-143 aa
PF00071Ras17-178 aa
PF08477Roc17-131 aa
PF00009GTP_EFTU17-32 aa
PF04670Gtr1_RagA17-131 aa
PF02421FeoB_N17-169 aa
PF01926MMR_HSR118-129 aa
PF00004AAA18-39 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G052950PF00025Arf161433.1e-1556.8
TkA08G052950PF00071Ras171784.7e-68228.6
TkA08G052950PF08477Roc171313.8e-35121.4
TkA08G052950PF00009GTP_EFTU17321.8e-0731.7
TkA08G052950PF04670Gtr1_RagA171310.0003220.9
TkA08G052950PF02421FeoB_N171690.1412.4
TkA08G052950PF01926MMR_HSR1181291.3e-0526.0
TkA08G052950PF00004AAA18390.02215.9
TkA08G052950PF13555AAA_2918320.0713.6
TkA08G052950PF13401AAA_2218370.2212.6
TkA08G052950PF03193RsgA_GTPase19368.6e-0523.1
TkA08G052950PF10581Synapsin_N34420.2811.6
TkA08G052950PF00009GTP_EFTU491741.8e-0731.7
TkA08G052950PF13124DUF3963941130.3411.7
TkA08G052950PF03193RsgA_GTPase1111758.6e-0523.1
TkA08G052950PF22077C2c1_Nuc-II1291870.09713.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P28186Arabidopsis thalianasp|P28186|RAE1C_ARATH Ras-related protein RABE1c93.000%Swiss-ProtHigh
O24466Arabidopsis thalianasp|O24466|RAE1A_ARATH Ras-related protein RABE1a91.200%Swiss-ProtHigh
Q9LZD4Arabidopsis thalianasp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d87.900%Swiss-ProtHigh
Q9SF91Arabidopsis thalianasp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e85.600%Swiss-ProtHigh

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