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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G051940
Reference: TK1151 Chr: Chr08 Coordinates: 13268650-13269051 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

402 bp · TkA08G051940|TK1151|cDNA

CTTGAAAAACACTCCAACACCGTGGCGCACATTATCCAAACCTACGCCCAATCCAAACAGCTATCTAAAGGAAAGCTTCTTCATACGCAGCTCATCACCTCCGGTTACCCATCATGCACCTATCTTACCAATCACCTCTTGTCAATGTATGCAAGATGTGGTCAACTCGGATACGCCCACAGGCTATTCGACGAAATGCCTCAGAGAAACTTGGTATCTTGGACTGCTATGATTTCTTCGTTTTCTCAGAACTCCGAGTT...

CDS

Download CDS FASTA

402 bp · TkA08G051940|TK1151|CDS

CTTGAAAAACACTCCAACACCGTGGCGCACATTATCCAAACCTACGCCCAATCCAAACAGCTATCTAAAGGAAAGCTTCTTCATACGCAGCTCATCACCTCCGGTTACCCATCATGCACCTATCTTACCAATCACCTCTTGTCAATGTATGCAAGATGTGGTCAACTCGGATACGCCCACAGGCTATTCGACGAAATGCCTCAGAGAAACTTGGTATCTTGGACTGCTATGATTTCTTCGTTTTCTCAGAACTCCGAGTT...

Protein

Download Protein FASTA

133 aa · TkA08G051940|TK1151|PROTEIN

LEKHSNTVAHIIQTYAQSKQLSKGKLLHTQLITSGYPSCTYLTNHLLSMYARCGQLGYAHRLFDEMPQRNLVSWTAMISSFSQNSEFTKAIATFCEMYISGESPNQFAFSSVIQACSSLKSLQFGKQIHCLLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G051940
TK1151 IDTkA08G051940
OH-1004 IDLXL04_018330
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.700
Protein coverage (%)TK1151 98.496 / OH-1004 11.717
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G051940
LocationChr08:13268650-13269051 (-)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g53360 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At3g47840 Putative pentatricopeptide repeat-containing protein At3g47840. No verified direct reference in this release
At5g52630 Putative pentatricopeptide repeat-containing protein At5g52630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018330 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.570
Rank 1 · TkA08G051940 · TK1151
Plastid0.277
Rank 2 · TkA08G051940 · TK1151
Cytoplasm0.041
Rank 3 · TkA08G051940 · TK1151
Nucleus0.037
Rank 4 · TkA08G051940 · TK1151
Peroxisome0.004
Rank 5 · TkA08G051940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N5-52 aa
PF13812PPR_36-20 aa
PF23276TPR_249-22 aa
PF13041PPR_210-23 aa
PF12921ATP1310-24 aa
PF01535PPR11-35 aa
PF13041PPR_241-71 aa
PF01535PPR44-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G051940PF29070MSC6_N5520.0413.7
TkA08G051940PF13812PPR_36202.1e-0525.2
TkA08G051940PF23276TPR_249220.1213.0
TkA08G051940PF13041PPR_210238.4e-1761.7
TkA08G051940PF12921ATP1310240.07613.6
TkA08G051940PF01535PPR11351.1e-1454.3
TkA08G051940PF13041PPR_241718.4e-1761.7
TkA08G051940PF01535PPR44701.1e-1454.3
TkA08G051940PF12854PPR_144662.5e-0731.0
TkA08G051940PF13812PPR_344682.1e-0525.2
TkA08G051940PF13812PPR_3691162.1e-0525.2
TkA08G051940PF13041PPR_2701178.4e-1761.7
TkA08G051940PF12854PPR_170972.5e-0731.0
TkA08G051940PF01535PPR72971.1e-1454.3
TkA08G051940PF23276TPR_24741160.1213.0
TkA08G051940PF29070MSC6_N751200.0413.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFI1Arabidopsis thalianasp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial40.700%Swiss-ProtMedium
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106532.600%Swiss-ProtMedium
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial38.700%Swiss-ProtMedium
Q9STS9Arabidopsis thalianasp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g4784035.500%Swiss-ProtMedium
Q9LTF4Arabidopsis thalianasp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g5263037.700%Swiss-ProtMedium

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