Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1239 bp · TkA08G050560|TK1151|cDNA
ATCATATCATAACCCGGCCCGACCGCCAAGTCCGAAGCTGTTCGCTAGAATCGATTCAGATTTGCAGTCATATTTGGCGCCTGTAAATGGAAAATTTCGGCCGTCGGAGAAAGCGTAGGGATCCATGGAGGTTAATTGGTCGGAGCACGGTGTCCTTCGTCTGTGTTTGCTTGGCGCAGTTTGTCCTCTACCTGATATCTTCCTTCTGTCCCTCTTCCAATATTATTTTACCTTTAGTTCTCTCAGTGATGGCATTGGTA...
966 bp · TkA08G050560|TK1151|CDS
ATGGAAAATTTCGGCCGTCGGAGAAAGCGTAGGGATCCATGGAGGTTAATTGGTCGGAGCACGGTGTCCTTCGTCTGTGTTTGCTTGGCGCAGTTTGTCCTCTACCTGATATCTTCCTTCTGTCCCTCTTCCAATATTATTTTACCTTTAGTTCTCTCAGTGATGGCATTGGTAGGGATGGCTGCAATAGGGAGAAAATTCAAGAGGTTATTTGGACTGCGTGGCTCAGCTCCTGCCTTCGTGTTTGCGAATTTATTGTT...
Protein
Download Protein FASTA321 aa · TkA08G050560|TK1151|PROTEIN
MENFGRRRKRRDPWRLIGRSTVSFVCVCLAQFVLYLISSFCPSSNIILPLVLSVMALVGMAAIGRKFKRLFGLRGSAPAFVFANLLFIWCAYAIVIRQAVSSLLDIVFNIELIMLQIGLYRILSGDPGFVNHKPPHENPDSLSNNETHPEESERLISDQECPSDESPLLLQRVRYCKHCDAHVKGFDHHCPAFGNCIGQNNHLLFSILIAGFITAEACYILGASQILTSSKGKKVDWNEKLASSTMIFSILQVLWQGVFL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G050560 |
|---|---|
| TK1151 ID | TkA08G050560 |
| OH-1004 ID | LXL04_017792 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G050560 |
|---|---|
| Location | Chr08:12893422-12895751 (-) |
| Description | Similar to Hip14: Palmitoyltransferase Hip14 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006612 protein targeting to membrane Biological Process GO:0007283 spermatogenesis Biological Process GO:0018230 peptidyl-L-cysteine S-palmitoylation Biological Process GO:0018345 protein palmitoylation Biological Process GO:0042953 lipoprotein transport Biological Process GO:0043067 regulation of programmed cell death Biological Process GO:0050714 positive regulation of protein secretion Biological Process GO:0051386 regulation of neurotrophin TRK receptor signaling pathway Biological Process GO:0070372 regulation of ERK1 and ERK2 cascade Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005576 extracellular region Cellular Component GO:0005783 endoplasmic reticulum Cellular Component |
| KEGG gene cross-reference | ath:AT3G09320 dme:Dmel_CG6017 dre:100332332 mmu:320150 rno:366889 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11992TgpA_N7-104 aaPF01529DHHC45-68 aaPF01529DHHC171-279 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G050560 | PF11992 | TgpA_N | 7 | 104 | 0.078 | 12.7 |
| TkA08G050560 | PF01529 | DHHC | 45 | 68 | 3.4e-19 | 70.0 |
| TkA08G050560 | PF01529 | DHHC | 171 | 279 | 3.4e-19 | 70.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.