TkA08G046040 | RubberDandelionOmics

Gene overview

TkA08G046040

Reference: TK1151 Chr: Chr08 Coordinates: 11699150-11700987 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1672 bp · TkA08G046040|TK1151|cDNA

TTCAAATCCCGTCTGGAATCCAGATGGTGCACTTTCCCTTGCACTTTACCCTTTTTGCCCCATCCATTTCCCCTCGAAAATATCTACCCCAGTTTCCAATCATTTACACGTGACCTGATCTTTCCGATCGAAAAATTTCTCAAATTTGTGCATCCTAGCCCAACAATTGTTATCTAGGGTGTTTAGTTCATTGAAAACGGTTGATTTTGTTTACCAATTTGATGTTATGGGAGAGGAAGTCAGAATTAGCGACTACGATG...

CDS

Download CDS FASTA

954 bp · TkA08G046040|TK1151|CDS

ATGGGAGAGGAAGTCAGAATTAGCGACTACGATGTCAGCGGTGGAGATGACGACGACCGAGTATCAGAGTGGGAAGCTGGGTTGCCGAACGTTGACGACTTACCGTCGTTGTCACAGTTGCTTATATCGGCAGAGATGGCGTCAGCTTTCAGCATCACAGCCGCCCCTCACCGGAGTATGGTTGACGTTGACCGCGCTTCTCGTGACACAGTTTCAAGTCTCCAAGGGCAGTCGCAACAACATCAGGTGAATAAACTTAC...

Protein

Download Protein FASTA

317 aa · TkA08G046040|TK1151|PROTEIN

MGEEVRISDYDVSGGDDDDRVSEWEAGLPNVDDLPSLSQLLISAEMASAFSITAAPHRSMVDVDRASRDTVSSLQGQSQQHQVNKLTDSKSFSDDRDEEMVVEGEETFDLTPDGSDSRKLRRVDSGGASGGAVEDAHSAMRADDTSTKTLKRIRLVWTPQLHKRFVEVVAHLGLKKAVPKTIMQMMNVEGLSRENVASHLQKYRLYVKRMHGSSNEAPSSSDPLFASPTVPKSSRNSVSGGGTVNPHSHVPIPMPYQPQM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G046040`
TK1151 ID	TkA08G046040
OH-1004 ID	LXL04_017843
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 93.691 / OH-1004 90.549 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G046040

Location Chr08:11699150-11700987 (+)

Description Similar to LUX: Transcription factor LUX

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46640`	Transcription factor that is essential for the generation of the circadian clock oscillation.	PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.2005 · DOI: 10.1111/j.1365-2443.2005.00892.x LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock.2011 · DOI: 10.1016/j.cub.2010.12.021
`At5g59570`	Transcription factor that is a critical component of the regulatory circuit of the circadian clock.	No verified direct reference in this release
`At2g40970`	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway.	A single-repeat R3-MYB transcription factor MYBC1 negatively regulates freezing tolerance in Arabidopsis.2010 · DOI: 10.1016/j.bbrc.2010.03.114
`At2g01760`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0971800`	Transcription factor that is essential for the generation of the circadian clock oscillation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017843 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0010119 regulation of stomatal movement Biological Process

KEGG gene cross-reference

ath:AT2G40970

ath:AT3G46640

ath:AT4G16110

ath:AT5G59570

dosa:Os01g0971800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · TkA08G046040 · TK1151

Cytoplasm0.086

Rank 2 · TkA08G046040 · TK1151

Cell membrane0.023

Rank 3 · TkA08G046040 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA08G046040 · TK1151

Plastid0.009

Rank 5 · TkA08G046040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding155-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G046040	`PF00249`	Myb_DNA-binding	155	204	2.7e-08	34.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SNB4`	Arabidopsis thaliana	sp\|Q9SNB4\|PCL1_ARATH Transcription factor LUX	51.300%	Swiss-Prot	High
`Q9LTH4`	Arabidopsis thaliana	sp\|Q9LTH4\|PCLL_ARATH Transcription factor BOA	49.200%	Swiss-Prot	Medium
`O22210`	Arabidopsis thaliana	sp\|O22210\|MYBC1_ARATH Transcription factor MYBC1	40.100%	Swiss-Prot	Medium
`Q8L9Y3`	Arabidopsis thaliana	sp\|Q8L9Y3\|ARR14_ARATH Two-component response regulator ARR14	58.200%	Swiss-Prot	Low
`Q94DH3`	Oryza sativa subsp. japonica	sp\|Q94DH3\|PCL1_ORYSJ Transcription factor PCL1	43.800%	Swiss-Prot	Medium

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