TkA08G042630 | RubberDandelionOmics

Gene overview

TkA08G042630

Reference: TK1151 Chr: Chr08 Coordinates: 10885954-10891040 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1413 bp · TkA08G042630|TK1151|cDNA

ATGCTCCGCGCGTGCGTAATAGACTTTGGAATCTCGTGGGATACCACCTACCCTAAATCGAATTCTCGTACAACAACAGTTATCACACTACCATTAAAGCAGCACCATTTGAAGCTTTATATGGACGAAAGTGTCGATCGCCTGTATGTCTCACCATGGAAGGGGATGGTACGTTTTGGGAAACGTGGTAAACTCAACCCACGCTACATTGGACCCTTCGAGATCCTAGCCAGGATCGGGCCAGTGGCATACAAACTCAA...

CDS

Download CDS FASTA

1413 bp · TkA08G042630|TK1151|CDS

ATGCTCCGCGCGTGCGTAATAGACTTTGGAATCTCGTGGGATACCACCTACCCTAAATCGAATTCTCGTACAACAACAGTTATCACACTACCATTAAAGCAGCACCATTTGAAGCTTTATATGGACGAAAGTGTCGATCGCCTGTATGTCTCACCATGGAAGGGGATGGTACGTTTTGGGAAACGTGGTAAACTCAACCCACGCTACATTGGACCCTTCGAGATCCTAGCCAGGATCGGGCCAGTGGCATACAAACTCAA...

Protein

Download Protein FASTA

470 aa · TkA08G042630|TK1151|PROTEIN

MLRACVIDFGISWDTTYPKSNSRTTTVITLPLKQHHLKLYMDESVDRLYVSPWKGMVRFGKRGKLNPRYIGPFEILARIGPVAYKLKLPQELQNVHDTFHVSNPKKCLTDTTLIVPLEEIQVNEKLNFVEEPVEIMDREVKRLKQIRIPIVKNAKNTKNTKNTLKDLHIFEDPRQDQARRTRSSTLVIDLHTYPRNLARSLEIPGFSLAQIPQDFSFRQPIQLFCKMNTLRSLTPRARIFIKQTLMNSPTFVLTLSKLIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G042630`
TK1151 ID	TkA08G042630
OH-1004 ID	LXL04_026794
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.400
Protein coverage (%)	TK1151 43.617 / OH-1004 25.834 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G042630`
Location	Chr08:10885954-10891040 (+)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026794` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0071897 DNA biosynthetic process Biological Process GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.393

Rank 1 · TkA08G042630 · TK1151

Nucleus0.258

Rank 2 · TkA08G042630 · TK1151

Mitochondrion0.169

Rank 3 · TkA08G042630 · TK1151

Plastid0.111

Rank 4 · TkA08G042630 · TK1151

Peroxisome0.072

Rank 5 · TkA08G042630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24626SH3_Tf2-156-107 aa

PF31073DUF880361-106 aa

PF22938Integrase_p58_C71-89 aa

PF07727RVT_2267-323 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G042630	`PF24626`	SH3_Tf2-1	56	107	4.2e-23	81.9
TkA08G042630	`PF31073`	DUF8803	61	106	0.0028	18.2
TkA08G042630	`PF22938`	Integrase_p58_C	71	89	0.062	14.1
TkA08G042630	`PF07727`	RVT_2	267	323	0.0048	17.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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