TkA08G040090 | RubberDandelionOmics

Gene overview

TkA08G040090

Reference: TK1151 Chr: Chr08 Coordinates: 10182450-10185000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1472 bp · TkA08G040090|TK1151|cDNA

AAACGACATGTCCATTGACCAGATACTTTACTCTTTTGTAGATTTGTAAAGAAAACTTAATAAAGTTGAATCTCATAGGAACTTCCACAATGCTGGTGTAGTACCACAATCATCTCAATGGCTTCTATCACTCTCTACTGCTCATCTTTCGCCATAGTCTCTCTTCTTCCTCACTCGACAGAATCCTTATGGCAGTAGCAGACCTCTCATTTTCAATTTCGGCGATTCCAACTCAGACACCGGAGGACTAGTTGCCGGTC...

CDS

Download CDS FASTA

918 bp · TkA08G040090|TK1151|CDS

ATGGGCCGCACTTTCTTTCGCAGATCCACCGGGCGTCTCTCCGATGGTCGTCTTCTTATTGATTTTTTATGCCAAAGTGTGAAGGCAAGTTTTTTGTCGGCATACATGGAGTCTTTGGGTACAACTTTTTCAACTGGGGCTAATTTTGCTGTGGTGGGGTCCGCTACGCTCCCAAAGTTTGTACCCTTTGCTTTAAACGTTCAGATTCAGCAATTCATTCACTTTAAGTCCAGGTCTAATGAGCTTCTTTCTTCTGGCTC...

Protein

Download Protein FASTA

305 aa · TkA08G040090|TK1151|PROTEIN

MGRTFFRRSTGRLSDGRLLIDFLCQSVKASFLSAYMESLGTTFSTGANFAVVGSATLPKFVPFALNVQIQQFIHFKSRSNELLSSGSQAMINNDGFQNALYMIDIGQNDIADAFAKKYSYAQVVKRIPLVLQEIKNAIKSLHDHGGRKFWVHNTGPLGCLPQKLWLEKPSSKQLDPNGCISTYNSAANLFNEGLRHLCAQLRSELKDATVIYVDIYSIKYDLIANAKKYGFSSPLMACCGFGGPPYNYNINVTCGHGGAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G040090`
TK1151 ID	TkA08G040090
OH-1004 ID	LXL04_017926
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.672 / OH-1004 82.162 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G040090

Location Chr08:10182450-10185000 (-)

Description Similar to At1g09390: GDSL esterase/lipase At1g09390

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09390`	GDSL esterase/lipase At1g09390.	No verified direct reference in this release
`At1g56670`	GDSL esterase/lipase LIP-4.	No verified direct reference in this release
`At3g62280`	GDSL esterase/lipase At3g62280.	No verified direct reference in this release
`At1g54790`	GDSL esterase/lipase At1g54790.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017926 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G09390

ath:AT1G54790

ath:AT1G56670

ath:AT3G05180

ath:AT3G62280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.562

Rank 1 · TkA08G040090 · TK1151

Cytoplasm0.114

Rank 2 · TkA08G040090 · TK1151

Endoplasmic reticulum0.099

Rank 3 · TkA08G040090 · TK1151

Lysosome / Vacuole0.091

Rank 4 · TkA08G040090 · TK1151

Cell membrane0.073

Rank 5 · TkA08G040090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL5-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G040090	`PF00657`	Lipase_GDSL	5	287	7.2e-49	167.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80522`	Arabidopsis thaliana	sp\|O80522\|GDL2_ARATH GDSL esterase/lipase At1g09390	66.800%	Swiss-Prot	High
`Q9FXB6`	Arabidopsis thaliana	sp\|Q9FXB6\|LIP4_ARATH GDSL esterase/lipase LIP-4	66.100%	Swiss-Prot	High
`Q6NLP7`	Arabidopsis thaliana	sp\|Q6NLP7\|GDL60_ARATH GDSL esterase/lipase At3g62280	53.500%	Swiss-Prot	High
`Q3ECP6`	Arabidopsis thaliana	sp\|Q3ECP6\|GDL22_ARATH GDSL esterase/lipase At1g54790	42.300%	Swiss-Prot	Medium

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