TkA08G038060 | RubberDandelionOmics

Gene overview

TkA08G038060

Reference: TK1151 Chr: Chr08 Coordinates: 9691550-9694087 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

615 bp · TkA08G038060|TK1151|cDNA

ATGGGGGAATCGAATGCAATTCTAGAAAACGATGAATCTAACGATATTGTTTCAACTAGCCACGGCTACCCAATGGGGCTGGGGTTTGGGGCGAGAAACGGAGTGAAGGCATTAAGAAACAGTGATGAAGGAAATTGGTGGAATTTTCCGATGGTGGATATGCTGGATATTACACCGGCGCCACCAGTGAAATGTGAGAAATCTCCGGTGGAGAAGAAGAAGAAAAAGAAGAAAGTGGAGCAATTACTACTGAAATTGAA...

CDS

Download CDS FASTA

615 bp · TkA08G038060|TK1151|CDS

ATGGGGGAATCGAATGCAATTCTAGAAAACGATGAATCTAACGATATTGTTTCAACTAGCCACGGCTACCCAATGGGGCTGGGGTTTGGGGCGAGAAACGGAGTGAAGGCATTAAGAAACAGTGATGAAGGAAATTGGTGGAATTTTCCGATGGTGGATATGCTGGATATTACACCGGCGCCACCAGTGAAATGTGAGAAATCTCCGGTGGAGAAGAAGAAGAAAAAGAAGAAAGTGGAGCAATTACTACTGAAATTGAA...

Protein

Download Protein FASTA

204 aa · TkA08G038060|TK1151|PROTEIN

MGESNAILENDESNDIVSTSHGYPMGLGFGARNGVKALRNSDEGNWWNFPMVDMLDITPAPPVKCEKSPVEKKKKKKKVEQLLLKLNYDAVINAWSGRGSPLPEEISQSAAAHIDLFSENGGWMESSATRSTDKNHLKKIRCQLKNLTTDRRPRCKVQFLHFQPHFSLIYCNLNTHLQLLQVYFQNLMINTLLMQRKVCNLKVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G038060`
TK1151 ID	TkA08G038060
OH-1004 ID	LXL04_017955
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.200
Protein coverage (%)	TK1151 78.431 / OH-1004 48.942 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G038060

Location Chr08:9691550-9694087 (+)

Description Similar to CIA2: Protein CHLOROPLAST IMPORT APPARATUS 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57180`	Responsible for specific up-regulation of the translocon genes TOC33 and TOC75 in leaves.	CIA2 coordinately up-regulates protein import and synthesis in leaf chloroplasts.2009 · DOI: 10.1104/pp.109.137240

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017955 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009641 shade avoidance Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0045036 protein targeting to chloroplast Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G25440

ath:AT1G68520

ath:AT1G73870

ath:AT5G57180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.630

Rank 1 · TkA08G038060 · TK1151

Cytoplasm0.316

Rank 2 · TkA08G038060 · TK1151

Mitochondrion0.073

Rank 3 · TkA08G038060 · TK1151

Cell membrane0.068

Rank 4 · TkA08G038060 · TK1151

Endoplasmic reticulum0.049

Rank 5 · TkA08G038060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LU68`	Arabidopsis thaliana	sp\|Q9LU68\|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2	43.800%	Swiss-Prot	Low

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