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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G029490
Reference: TK1151 Chr: Chr08 Coordinates: 7543172-7543735 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

534 bp · TkA08G029490|TK1151|cDNA

ATGCCAAACCCCAATCGCCACCACAATCTTGACACCCAACACCGCCATGACCACGCCAACAGCAACACCCCGTCACCACCCAAACCCAGCCCCAAACTCCTCTCCATCTTCCTTAAAATTATTGTCATGTTCCTTATTCTATCCCTATTCCTCCTCTTCCTTGGTCTTGCCGCCATCCTCCTACTCCTCGCCGGCTCCTTTCTCCACCGCCGCCAACGCCTCCTCCTCCGCTCAACCCCAGACATACAGAACCACCTACC...

CDS

Download CDS FASTA

534 bp · TkA08G029490|TK1151|CDS

ATGCCAAACCCCAATCGCCACCACAATCTTGACACCCAACACCGCCATGACCACGCCAACAGCAACACCCCGTCACCACCCAAACCCAGCCCCAAACTCCTCTCCATCTTCCTTAAAATTATTGTCATGTTCCTTATTCTATCCCTATTCCTCCTCTTCCTTGGTCTTGCCGCCATCCTCCTACTCCTCGCCGGCTCCTTTCTCCACCGCCGCCAACGCCTCCTCCTCCGCTCAACCCCAGACATACAGAACCACCTACC...

Protein

Download Protein FASTA

177 aa · TkA08G029490|TK1151|PROTEIN

MPNPNRHHNLDTQHRHDHANSNTPSPPKPSPKLLSIFLKIIVMFLILSLFLLFLGLAAILLLLAGSFLHRRQRLLLRSTPDIQNHLPPFQYPPPEKSPAAAASSSDDCSICLEYFNVGEICRVLPVCDHVFHARCVDKWLTKVPNCPICRTRVRLDDAAPFDSMISDDETKFFWHSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G029490
TK1151 IDTkA08G029490
OH-1004 IDLXL04_028287
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)45.900
Protein coverage (%)TK1151 98.305 / OH-1004 93.583
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G029490
LocationChr08:7543172-7543735 (+)
DescriptionSimilar to ATL56: RING-H2 finger protein ATL56
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18773 RING-H2 finger protein ATL77. No verified direct reference in this release
At4g09100 RING-H2 finger protein ATL39. No verified direct reference in this release
At2g35000 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At4g11360 Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0535400 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028287 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0031982 vesicle Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G18670
ath:AT2G42360
ath:AT3G18930
ath:AT4G28890
ath:AT4G30370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.335
Rank 1 · TkA08G029490 · TK1151
Endoplasmic reticulum0.281
Rank 2 · TkA08G029490 · TK1151
Lysosome / Vacuole0.200
Rank 3 · TkA08G029490 · TK1151
Nucleus0.164
Rank 4 · TkA08G029490 · TK1151
Cytoplasm0.157
Rank 5 · TkA08G029490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29452FAR1_N105-166 aa
PF13639zf-RING_2106-150 aa
PF13920zf-C3HC4_3106-153 aa
PF17123zf-RING_11107-136 aa
PF14634zf-RING_5107-151 aa
PF17120zf-RING_16107-147 aa
PF11793FANCL_C107-144 aa
PF13923zf-C3HC4_2108-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G029490PF29452FAR1_N1051660.08313.6
TkA08G029490PF13639zf-RING_21061508.3e-1452.3
TkA08G029490PF13920zf-C3HC4_31061530.0006920.1
TkA08G029490PF17123zf-RING_111071363.1e-0937.1
TkA08G029490PF14634zf-RING_51071510.0002321.8
TkA08G029490PF17120zf-RING_161071470.001718.6
TkA08G029490PF11793FANCL_C1071440.1313.2
TkA08G029490PF13923zf-C3HC4_21081498.4e-0729.4
TkA08G029490PF13445zf-RING_UBOX1081473.5e-0627.6
TkA08G029490PF00097zf-C3HC41081490.0002221.7
TkA08G029490PF14447Prok-RING_41081590.01316.1
TkA08G029490PF08746zf-RING-like1081490.01616.0
TkA08G029490PF24921RING_XB3-XBAT311081531.69.5
TkA08G029490PF23555zf-RING_Vps411081433.48.1
TkA08G029490PF12678zf-rbx11161501.8e-0732.0
TkA08G029490PF12861zf-ANAPC111181550.0001422.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS99Arabidopsis thalianasp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL7757.800%Swiss-ProtLow
Q9M0R7Arabidopsis thalianasp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL3951.100%Swiss-ProtLow
O64763Arabidopsis thalianasp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL942.900%Swiss-ProtLow
Q9SUS5Arabidopsis thalianasp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B43.100%Swiss-ProtLow
Q5Z5F2Oryza sativa subsp. japonicasp|Q5Z5F2|ATL61_ORYSJ E3 ubiquitin-protein ligase Os06g053540050.000%Swiss-ProtLow

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