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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G026960
Reference: TK1151 Chr: Chr08 Coordinates: 6978776-6981176 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1459 bp · TkA08G026960|TK1151|cDNA

ATCTACCCCAACAATAACAAAAAGGAAGTTTTCACTCTTCCTCCATCCTAGAACCCTAACAATGGCAACAGAAACCCTAAAGCAATTCCACAGGCTTCCACAATCAACCTACATCGACGCTCTCCGATTTCTTCCTCCACTGTCCGCGTTCGACCGCTACGTCGTTGTAGCCGCATTCAACTCCGATACCGACGAAAGCTCCATTGGAATCCATGCCTTAAACCCCACAGACGCACCTACTCTAACCCTACAATCCTCAT...

CDS

Download CDS FASTA

1047 bp · TkA08G026960|TK1151|CDS

ATGGCAACAGAAACCCTAAAGCAATTCCACAGGCTTCCACAATCAACCTACATCGACGCTCTCCGATTTCTTCCTCCACTGTCCGCGTTCGACCGCTACGTCGTTGTAGCCGCATTCAACTCCGATACCGACGAAAGCTCCATTGGAATCCATGCCTTAAACCCCACAGACGCACCTACTCTAACCCTACAATCCTCATTCACAACATCCTCCAGAATATCCTCCCTAAAAGTTGCACAAAAGTCGCTCCAAAGCCCCTT...

Protein

Download Protein FASTA

348 aa · TkA08G026960|TK1151|PROTEIN

MATETLKQFHRLPQSTYIDALRFLPPLSAFDRYVVVAAFNSDTDESSIGIHALNPTDAPTLTLQSSFTTSSRISSLKVAQKSLQSPLIAASTFAGSLHILFPNPIDASFESEVSIPEKKLHLGPISCLDLQESGSACVSVGEDGRVNLISVSDSGLDYRRVFDSKGLVSYTAARWASPTEFATGGLGNSLQWWDQRRPGGPVSQFKGNWGEGASCGVVHSIDIHPSRKHTCLAGGSYGSVFAWDLRRPQQPIILSGIGSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G026960
TK1151 IDTkA08G026960
OH-1004 IDLXL04_018096
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G026960
LocationChr08:6978776-6981176 (-)
DescriptionSimilar to NUP43: Nuclear pore complex protein NUP43
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30840 Nuclear pore complex protein NUP43. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018096 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0015031 protein transport Biological Process
GO:0051028 mRNA transport Biological Process
GO:0051301 cell division Biological Process
GO:0000776 kinetochore Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0031080 nuclear pore outer ring Cellular Component
KEGG gene cross-reference
ath:AT4G30840
hsa:348995
mmu:69912
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573
Rank 1 · TkA08G026960 · TK1151
Nucleus0.573
Rank 2 · TkA08G026960 · TK1151
Peroxisome0.046
Rank 3 · TkA08G026960 · TK1151
Lysosome / Vacuole0.044
Rank 4 · TkA08G026960 · TK1151
Cell membrane0.039
Rank 5 · TkA08G026960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23411Beta-prop_Vps4187-158 aa
PF24805EIF3I116-155 aa
PF25047Beta-prop_TEP1_2nd118-148 aa
PF24814WD40_Prp19119-250 aa
PF25175Beta-prop_WDR5120-249 aa
PF00400WD40121-148 aa
PF25174Beta-prop_THOC3124-197 aa
PF25047Beta-prop_TEP1_2nd180-202 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G026960PF23411Beta-prop_Vps41871580.03814.0
TkA08G026960PF24805EIF3I1161550.003317.3
TkA08G026960PF25047Beta-prop_TEP1_2nd1181480.00417.1
TkA08G026960PF24814WD40_Prp191192500.0004520.1
TkA08G026960PF25175Beta-prop_WDR51202490.1811.8
TkA08G026960PF00400WD401211480.006817.6
TkA08G026960PF25174Beta-prop_THOC31241970.02614.3
TkA08G026960PF25047Beta-prop_TEP1_2nd1802020.00417.1
TkA08G026960PF00400WD401811940.006817.6
TkA08G026960PF23609Beta-prop_EIPR11882500.1312.4
TkA08G026960PF00400WD402142440.006817.6
TkA08G026960PF24805EIF3I2162460.003317.3
TkA08G026960PF24814WD40_Prp192182500.0004520.1
TkA08G026960PF25174Beta-prop_THOC32182500.02614.3
TkA08G026960PF25047Beta-prop_TEP1_2nd2332580.00417.1
TkA08G026960PF00400WD402692780.006817.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q24JJ9Arabidopsis thalianasp|Q24JJ9|NUP43_ARATH Nuclear pore complex protein NUP4354.500%Swiss-ProtHigh

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